Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   RS960_RS08370 Genome accession   NZ_CP135966
Coordinates   1722372..1723646 (+) Length   424 a.a.
NCBI ID   WP_262607554.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ST5477     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1717372..1728646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS960_RS08350 (RS960_08350) - 1718696..1718791 (+) 96 WP_031761395.1 hypothetical protein -
  RS960_RS08355 (RS960_08355) - 1718752..1719882 (-) 1131 WP_262607552.1 HAD family hydrolase -
  RS960_RS08360 (RS960_08360) nagE 1719989..1721455 (-) 1467 WP_317528621.1 N-acetylglucosamine-specific PTS transporter subunit IIBC -
  RS960_RS08365 (RS960_08365) - 1721583..1722200 (-) 618 WP_000287588.1 lysophospholipid acyltransferase family protein -
  RS960_RS08370 (RS960_08370) htrA 1722372..1723646 (+) 1275 WP_262607554.1 S1C family serine protease Regulator
  RS960_RS08375 (RS960_08375) tyrS 1723740..1725002 (-) 1263 WP_259378846.1 tyrosine--tRNA ligase -
  RS960_RS08380 (RS960_08380) - 1725383..1726288 (+) 906 WP_262538544.1 transglycosylase domain-containing protein -
  RS960_RS08385 (RS960_08385) - 1726268..1726360 (-) 93 WP_031761401.1 hypothetical protein -

Sequence


Protein


Download         Length: 424 a.a.        Molecular weight: 45812.97 Da        Isoelectric Point: 9.8673

>NTDB_id=812596 RS960_RS08370 WP_262607554.1 1722372..1723646(+) (htrA) [Staphylococcus aureus strain ST5477]
MSDFNHTDHSTTNHSQTPRYRRPKFPWFKTVIVALIAGIIGALLVLGIGKVLNSTILNKDGSTVQTTNNKGGNQLDGQSK
KFGTVHEMIKSVSPTIVGVINMQKASSVDDLLKGKSSKPSEAGVGSGVIYQINNNSAYIVTNNHVIDGANEIRVQLHNKK
QVKAKLVGKDAVTDIAVLKIEYTKGIKAIQFANSSKVQTGDSVFAMGNPLGLQFANSVTSGIISASERTIDAETTGGNTK
VSVLQTDAAINPGNSGGALVDINGNLVGINSMKIAATQVEGIGFAIPSNEVKVTIEQLVKHGKIDRPSIGISLINLKDIP
EEEREQLHTDSEDGIYVAKADSDIDLKKGDIITEIDGKKIKDDVDLRSYLYENKKPGESVTVTVIRDGKTKEVKVKLKQQ
KEQPKRQSRSERQSPGQGDRDFFR

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=812596 RS960_RS08370 WP_262607554.1 1722372..1723646(+) (htrA) [Staphylococcus aureus strain ST5477]
ATGTCAGATTTTAATCATACAGATCATTCTACAACAAACCATAGCCAAACACCTAGATACAGAAGACCTAAATTTCCATG
GTTTAAAACAGTCATCGTTGCATTGATTGCTGGAATCATTGGTGCACTTCTAGTACTTGGTATAGGCAAAGTATTAAATA
GTACAATTTTAAATAAAGATGGTTCAACTGTCCAGACAACAAATAATAAAGGTGGCAATCAATTAGACGGTCAAAGCAAG
AAATTCGGTACCGTTCATGAAATGATAAAATCTGTATCCCCTACAATTGTTGGAGTTATTAACATGCAAAAAGCATCAAG
TGTAGACGACTTATTAAAAGGCAAATCATCTAAACCATCTGAAGCCGGAGTAGGTTCAGGTGTCATCTATCAAATAAACA
ACAATTCAGCTTATATCGTTACAAACAATCATGTTATTGATGGCGCAAATGAAATTAGAGTCCAATTACATAATAAAAAA
CAAGTTAAAGCCAAATTAGTTGGTAAAGATGCAGTAACTGATATTGCTGTACTTAAAATTGAATATACAAAAGGTATTAA
AGCGATTCAATTCGCCAACTCTTCAAAAGTACAAACTGGTGATAGCGTATTCGCAATGGGTAACCCATTAGGATTACAAT
TTGCTAACTCTGTAACATCTGGTATCATTTCAGCAAGTGAACGTACTATTGACGCTGAGACAACTGGTGGCAATACAAAA
GTCAGCGTTCTTCAAACAGATGCTGCTATTAACCCAGGTAACTCAGGTGGCGCATTAGTAGATATTAATGGTAATTTAGT
TGGTATTAACTCAATGAAAATTGCTGCGACACAAGTTGAAGGTATCGGGTTTGCCATTCCAAGTAATGAAGTTAAAGTAA
CAATTGAACAACTTGTAAAACATGGTAAAATTGACCGCCCTTCGATTGGTATTAGTTTAATTAATTTGAAAGATATTCCT
GAAGAAGAGCGCGAGCAACTTCATACTGATAGCGAAGACGGTATTTATGTCGCAAAAGCTGATAGTGATATTGATCTTAA
AAAAGGTGATATTATTACAGAAATTGATGGCAAGAAAATTAAAGATGATGTTGATTTAAGAAGCTATTTGTATGAAAATA
AAAAGCCTGGTGAATCAGTCACTGTTACCGTTATCCGTGATGGTAAAACTAAAGAAGTTAAAGTGAAATTAAAACAACAA
AAAGAACAACCAAAACGTCAAAGCCGATCAGAGCGTCAATCACCTGGCCAAGGCGATAGAGATTTCTTTAGATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

39.303

94.811

0.373