Detailed information    

insolico Bioinformatically predicted

Overview


Name   braR   Type   Regulator
Locus tag   RS960_RS03195 Genome accession   NZ_CP135966
Coordinates   666079..666753 (+) Length   224 a.a.
NCBI ID   WP_001166496.1    Uniprot ID   Q2YSS2
Organism   Staphylococcus aureus strain ST5477     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 661079..671753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS960_RS03170 (RS960_03170) - 661306..662373 (+) 1068 WP_000980139.1 membrane protein -
  RS960_RS03175 (RS960_03175) - 662524..663567 (+) 1044 WP_217175911.1 alpha/beta hydrolase -
  RS960_RS03180 (RS960_03180) - 663895..664323 (+) 429 WP_262537226.1 hypothetical protein -
  RS960_RS03185 (RS960_03185) - 664521..665027 (-) 507 WP_000940129.1 GNAT family N-acetyltransferase -
  RS960_RS03190 (RS960_03190) graX 665140..666063 (+) 924 WP_000802957.1 auxiliary protein GraX/ApsX -
  RS960_RS03195 (RS960_03195) braR 666079..666753 (+) 675 WP_001166496.1 response regulator transcription factor GraR/ApsR Regulator
  RS960_RS03200 (RS960_03200) graS 666746..667786 (+) 1041 WP_262537224.1 histidine kinase GraS/ApsS -
  RS960_RS03205 (RS960_03205) vraF 667932..668693 (+) 762 WP_229374407.1 ABC transporter ATP-binding protein VraF -
  RS960_RS03210 (RS960_03210) vraG 668683..670572 (+) 1890 WP_317528897.1 ABC transporter permease VraG -

Sequence


Protein


Download         Length: 224 a.a.        Molecular weight: 26093.93 Da        Isoelectric Point: 4.3563

>NTDB_id=812541 RS960_RS03195 WP_001166496.1 666079..666753(+) (braR) [Staphylococcus aureus strain ST5477]
MQILLVEDDNTLFQELKKELEQWDFNVAGIEDFGKVMDTFESFNPEIVILDVQLPKYDGFYWCRKMREVSNVPILFLSSR
DNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFTAEEKRTLTWQDAIIDLSKDSIQKGDDTIFLSKTEMIIL
EILITKKNQIVSRDTIITALWDDEAFVSDNTLTVNVNRLRKKLSEISMDSAIETKVGKGYMAHE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=812541 RS960_RS03195 WP_001166496.1 666079..666753(+) (braR) [Staphylococcus aureus strain ST5477]
ATGCAAATACTACTAGTAGAAGATGACAATACTTTGTTTCAAGAATTGAAAAAAGAATTAGAACAATGGGATTTTAATGT
TGCTGGTATTGAAGATTTCGGCAAAGTAATGGATACATTTGAAAGTTTTAATCCTGAAATTGTTATATTGGATGTTCAAT
TACCTAAATATGATGGGTTTTATTGGTGCAGAAAAATGAGAGAAGTTTCCAACGTACCAATATTATTTTTATCATCTCGT
GATAATCCAATGGATCAAGTGATGAGTATGGAACTTGGCGCAGATGATTATATGCAAAAGCCTTTTTATACAAATGTATT
AATTGCTAAATTACAAGCGATTTATCGACGAGTGTATGAATTTACTGCTGAAGAAAAACGCACGTTAACATGGCAAGATG
CCATTATAGATTTATCAAAAGATAGTATACAAAAAGGTGACGATACGATTTTTCTATCCAAAACAGAAATGATTATATTA
GAAATTCTTATTACCAAAAAAAATCAAATCGTTTCGAGAGATACAATTATCACTGCATTATGGGATGATGAAGCATTTGT
TAGTGATAATACGTTAACAGTAAATGTGAATCGTTTGCGAAAAAAATTATCTGAAATAAGTATGGATAGTGCAATCGAAA
CAAAAGTAGGAAAAGGATATATGGCTCATGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB Q2YSS2

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.455

98.214

0.397