Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   RTE58_RS03920 Genome accession   NZ_CP135959
Coordinates   811563..812798 (-) Length   411 a.a.
NCBI ID   WP_021516453.1    Uniprot ID   -
Organism   Escherichia coli strain MS1266     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 806563..817798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RTE58_RS03910 (RTE58_03910) - 808875..810248 (+) 1374 WP_021516455.1 bifunctional cytidylyltransferase/SDR family oxidoreductase -
  RTE58_RS03915 (RTE58_03915) - 810265..811401 (+) 1137 WP_021516454.1 hypothetical protein -
  RTE58_RS03920 (RTE58_03920) kpsS 811563..812798 (-) 1236 WP_021516453.1 capsule biosynthesis protein Regulator
  RTE58_RS03925 (RTE58_03925) - 812833..814860 (-) 2028 WP_021516452.1 capsular polysaccharide biosynthesis protein -
  RTE58_RS03930 (RTE58_03930) kdsB 814857..815597 (-) 741 WP_064238230.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RTE58_RS03935 (RTE58_03935) - 815607..817283 (-) 1677 WP_001332993.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 49052.55 Da        Isoelectric Point: 10.0138

>NTDB_id=812464 RTE58_RS03920 WP_021516453.1 811563..812798(-) (kpsS) [Escherichia coli strain MS1266]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVRTQINGVYYGDRCFEHDIKV
DKDSWSLTRQV

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=812464 RTE58_RS03920 WP_021516453.1 811563..812798(-) (kpsS) [Escherichia coli strain MS1266]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCCGGATGGTTACGGGATCTCCATCGGCAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGCTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAGGAAGGATATTTACGCCCGCAATTTATTACCGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGCATTGGCCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCATTTTCCCCCTGGTATGAAGCTCGTTGCTGGGTTCGTGCGTACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AAGTATTGCCGCGGTTAATGAATGAGCTGGATCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGAGATTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCAAAAGA
AAGTTATTTGGTGATCAAGCACCATCCAATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAACGGTTGAGTAAGG
AATATGGCTTAGGTGAGCGCGTCATTTATGTGCACGATCTCCCGATGCCGGAATTGTTACGCCACGCAAAAGCGGTGGTG
ACAATTAACAGTACGGCGGGGATATCTGCGCTGATTCACAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCGGATATGAAACTGTTTAAGAAGT
TTCGGGGGTATTTATTGGTGAGGACGCAGATTAATGGGGTTTATTATGGTGATAGATGTTTTGAACATGATATTAAGGTG
GATAAGGATTCTTGGAGTCTTACACGTCAAGTTTGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.898

95.134

0.38