Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   QA587_RS02395 Genome accession   NZ_CP121477
Coordinates   468814..469881 (+) Length   355 a.a.
NCBI ID   WP_024051203.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain 44DSE01     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 463814..474881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QA587_RS02365 - 464233..465693 (+) 1461 WP_001832757.1 rhomboid family intramembrane serine protease -
  QA587_RS02370 - 465677..465877 (+) 201 WP_001831138.1 YqgQ family protein -
  QA587_RS02375 - 465877..466863 (+) 987 WP_001831113.1 ROK family glucokinase -
  QA587_RS02380 - 466863..467189 (+) 327 WP_001831234.1 MTH1187 family thiamine-binding protein -
  QA587_RS02385 - 467189..467812 (+) 624 WP_002446535.1 MBL fold metallo-hydrolase -
  QA587_RS02390 comGA 467868..468842 (+) 975 WP_024051204.1 competence type IV pilus ATPase ComGA Machinery gene
  QA587_RS02395 comGB 468814..469881 (+) 1068 WP_024051203.1 competence type IV pilus assembly protein ComGB Machinery gene
  QA587_RS02400 comGC 469899..470216 (+) 318 WP_001831271.1 competence type IV pilus major pilin ComGC Machinery gene
  QA587_RS02405 comGD 470206..470643 (+) 438 WP_001831025.1 competence type IV pilus minor pilin ComGD -
  QA587_RS02410 - 470630..470923 (+) 294 WP_099797718.1 hypothetical protein -
  QA587_RS02415 - 470847..471338 (+) 492 WP_002440043.1 competence type IV pilus minor pilin ComGF -
  QA587_RS02420 - 471503..472015 (+) 513 WP_002497929.1 shikimate kinase -
  QA587_RS02425 gcvT 472233..473324 (+) 1092 WP_099797720.1 glycine cleavage system aminomethyltransferase GcvT -
  QA587_RS02430 gcvPA 473344..474690 (+) 1347 WP_099797722.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 42360.63 Da        Isoelectric Point: 10.1330

>NTDB_id=812379 QA587_RS02395 WP_024051203.1 468814..469881(+) (comGB) [Staphylococcus epidermidis strain 44DSE01]
MKKLSINTFKYKRNKYLTEIQSIDLLQRLQQLLSHGFTLYQSFKFLNSYFKYKERTINKKIIQHLQNGATCYDILKIIGY
PELVLLQIKFAENYGNIEEALVDTVQYMKRNLKAKKRLIKTLQYPVALISIFLFILTILNITVIPQFQQLYETMNVKLST
FQNLLTLIITRLPKLTFIFIFISGIAFFITYKFYYYLPIEKKLKSILKIPMINTYYKIYRTYQLSNQLSLFYRNGTSLQQ
IVHIYRNEQDNDFLKFLGDYLFKEANKGLPLPVILMNLKCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEKVLKQ
TKFIQPIIFFILGIFIVSLYLVIMLPMFELMQTIK

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=812379 QA587_RS02395 WP_024051203.1 468814..469881(+) (comGB) [Staphylococcus epidermidis strain 44DSE01]
GTGAAGAAGTTGTCGATAAATACATTTAAATATAAGAGGAATAAATATCTTACTGAAATACAATCAATAGACTTACTACA
GAGATTACAACAGCTTTTAAGTCACGGATTCACTTTATATCAAAGTTTTAAATTTTTAAACTCCTATTTTAAATATAAAG
AGCGAACAATAAATAAAAAGATTATCCAACATCTACAAAACGGTGCTACATGTTATGATATTTTAAAAATAATAGGGTAT
CCAGAATTAGTTCTTCTTCAAATAAAATTTGCTGAAAACTACGGCAACATTGAGGAGGCTCTCGTTGATACTGTTCAATA
TATGAAAAGAAATCTGAAAGCTAAAAAACGACTCATCAAAACCTTACAATATCCTGTTGCATTAATTTCTATCTTCTTAT
TCATATTAACCATTTTAAATATAACTGTCATACCTCAATTTCAACAACTTTATGAGACTATGAATGTTAAATTATCAACA
TTTCAAAATCTACTAACTCTTATTATTACCCGTCTTCCCAAACTAACTTTCATTTTTATCTTTATTAGTGGTATAGCATT
TTTTATCACTTATAAATTCTACTATTATCTACCAATTGAGAAAAAGTTAAAATCTATTTTAAAAATCCCAATGATTAATA
CGTATTATAAAATATATAGAACTTATCAACTTTCCAATCAACTTTCTTTATTTTACAGAAATGGTACAAGTCTTCAACAA
ATTGTCCATATATATCGTAATGAGCAAGATAACGATTTTCTTAAATTTCTGGGTGATTATCTTTTTAAAGAAGCTAATAA
AGGGCTCCCGTTACCTGTTATATTAATGAATTTAAAATGTTTTCAAAATGATTTGATTAAATTCATAGAACAAGGAGAGA
AAAATGGGAAATTAGATATAGAATTAAAGTTATACAGTCAAATGCTATTACAGCAATTTGAAGAAAAAGTGTTAAAACAA
ACAAAATTTATACAACCTATCATCTTCTTTATCTTGGGAATTTTTATTGTATCTTTATACTTAGTCATTATGCTTCCTAT
GTTTGAACTTATGCAAACAATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(225-346)

Type II secretion system (T2SS), protein F (T2SSF)

(26-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

49.719

100

0.499
  comGB Staphylococcus aureus N315

49.719

100

0.499