Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   P8P68_RS06995 Genome accession   NZ_CP121467
Coordinates   1429680..1431017 (-) Length   445 a.a.
NCBI ID   WP_278276307.1    Uniprot ID   A0AAX3TMW2
Organism   Streptococcus sp. D7B5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1424680..1436017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8P68_RS06970 (P8P68_06970) - 1425015..1426184 (-) 1170 WP_049479245.1 pyridoxal phosphate-dependent aminotransferase -
  P8P68_RS06975 (P8P68_06975) - 1426336..1427346 (+) 1011 WP_000009129.1 YeiH family protein -
  P8P68_RS06980 (P8P68_06980) - 1427373..1427810 (-) 438 WP_000076506.1 CoA-binding protein -
  P8P68_RS06985 (P8P68_06985) - 1427930..1428898 (-) 969 WP_000010171.1 ribose-phosphate diphosphokinase -
  P8P68_RS06990 (P8P68_06990) - 1429113..1429607 (-) 495 WP_009013771.1 carbonic anhydrase -
  P8P68_RS06995 (P8P68_06995) radA 1429680..1431017 (-) 1338 WP_278276307.1 DNA repair protein RadA Machinery gene
  P8P68_RS07000 (P8P68_07000) - 1431038..1431505 (-) 468 WP_000796429.1 isochorismatase family cysteine hydrolase -
  P8P68_RS07005 (P8P68_07005) - 1431515..1431958 (-) 444 WP_070837624.1 dUTP diphosphatase -
  P8P68_RS07015 (P8P68_07015) tadA 1432144..1432611 (-) 468 WP_001110101.1 tRNA adenosine(34) deaminase TadA -
  P8P68_RS07020 (P8P68_07020) - 1432812..1434098 (-) 1287 WP_125398133.1 adenylosuccinate synthase -
  P8P68_RS07025 (P8P68_07025) comW 1434340..1434576 (-) 237 WP_000939513.1 sigma(X)-activator ComW -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 48631.86 Da        Isoelectric Point: 5.2532

>NTDB_id=812240 P8P68_RS06995 WP_278276307.1 1429680..1431017(-) (radA) [Streptococcus sp. D7B5]
MCQNCAYNSPKYLGRCPNCGSWSSFVEEVEVAEVKNARVSLTGEKTKPMKLAEVTSINVNRTKTEMEEFNRVLGGGVVPG
SLVLIGGDPGIGKSTLLLQVSTQLSQVGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSVRSEVERIQPDFLI
IDSIQTIMSPEISGVQGSVSQVREVTAELMQLAKTNNIAIFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGERHHTFRILR
AVKNRFGSTNEIGIFEMQSGGLVEVLNPSQVFLEERLDGATGSSIVVTMEGTRPILAEVQALVTPTMFGNAKRTTTGLDF
NRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKDKPTNPQECFVGELGLTGEIRRVNRIEQR
INEAEKLGFTKIYVPKNSLTGITPPKEIEVIGVTTIQEVLKKVFA

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=812240 P8P68_RS06995 WP_278276307.1 1429680..1431017(-) (radA) [Streptococcus sp. D7B5]
ATTTGTCAAAATTGTGCTTATAACTCACCCAAATATCTAGGGCGTTGTCCAAACTGTGGGTCTTGGTCTTCTTTTGTCGA
GGAAGTTGAGGTTGCTGAGGTCAAGAATGCGCGTGTGTCCTTGACAGGTGAAAAAACCAAGCCTATGAAACTGGCTGAGG
TGACTTCCATCAATGTCAATCGAACCAAGACGGAGATGGAGGAATTCAACCGTGTGCTTGGAGGCGGAGTGGTACCAGGG
AGTCTCGTCCTTATCGGTGGGGATCCAGGAATCGGGAAATCAACCCTTCTCCTACAAGTTTCAACCCAGCTGTCTCAAGT
GGGTACGGTTCTCTATGTCAGTGGGGAGGAGTCTGCCCAGCAGATTAAGTTACGGGCAGAGCGCTTGGGTGATATTGATA
GTGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTGTTCGATCTGAGGTGGAGCGCATCCAACCAGATTTTCTCATC
ATCGACTCTATCCAGACGATTATGTCTCCTGAGATTTCAGGGGTGCAGGGGTCTGTGTCTCAGGTGCGTGAAGTAACGGC
TGAACTCATGCAGCTGGCGAAGACTAATAACATTGCCATCTTTATCGTAGGGCATGTGACCAAGGAAGGGACCTTGGCGG
GTCCGCGTATGTTGGAGCATATGGTAGATACAGTGCTTTACTTTGAAGGGGAACGTCACCATACCTTTCGTATCTTGAGA
GCAGTCAAAAACCGTTTTGGTTCCACTAATGAGATTGGCATCTTTGAGATGCAGTCGGGTGGATTGGTTGAGGTGCTCAA
TCCGAGTCAAGTTTTCCTAGAGGAGCGTTTGGATGGAGCGACTGGCTCATCAATTGTGGTGACCATGGAAGGGACCCGTC
CGATTTTGGCGGAGGTTCAGGCTTTGGTAACACCAACCATGTTTGGAAATGCTAAACGTACGACGACTGGACTTGATTTC
AATCGTGCAAGTCTGATTATGGCTGTTTTGGAAAAACGAGCAGGGCTTCTCTTGCAAAACCAGGATGCCTATCTCAAATC
TGCTGGTGGTGTAAAATTGGATGAGCCTGCCATTGACTTGGCTGTTGCAGTGGCTATTGCCTCTAGTTACAAGGACAAGC
CTACCAATCCTCAGGAATGTTTTGTGGGTGAACTGGGCTTGACCGGAGAAATTCGGCGCGTGAATCGCATCGAACAACGC
ATCAATGAAGCGGAAAAATTGGGCTTTACCAAGATTTATGTACCCAAGAATTCCTTGACAGGAATCACTCCACCCAAGGA
AATTGAAGTCATTGGTGTGACGACTATTCAGGAAGTTTTGAAAAAGGTCTTTGCATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(352-417)

AAA domain (AAA_25)

(55-210)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

98.876

100

0.989
  radA Streptococcus mitis SK321

98.652

100

0.987
  radA Streptococcus pneumoniae Rx1

98.652

100

0.987
  radA Streptococcus pneumoniae D39

98.652

100

0.987
  radA Streptococcus pneumoniae R6

98.652

100

0.987
  radA Streptococcus pneumoniae TIGR4

98.652

100

0.987
  radA Bacillus subtilis subsp. subtilis str. 168

63.146

100

0.631