Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG/cglG   Type   Machinery gene
Locus tag   P8P68_RS06250 Genome accession   NZ_CP121467
Coordinates   1290649..1291062 (-) Length   137 a.a.
NCBI ID   WP_049490203.1    Uniprot ID   A0AAX3TGS4
Organism   Streptococcus sp. D7B5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1289385..1289996 1290649..1291062 flank 653


Gene organization within MGE regions


Location: 1289385..1291062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8P68_RS06245 (P8P68_06245) - 1289990..1290616 (-) 627 WP_278275776.1 class I SAM-dependent methyltransferase -
  P8P68_RS06250 (P8P68_06250) comGG/cglG 1290649..1291062 (-) 414 WP_049490203.1 competence type IV pilus minor pilin ComGG Machinery gene

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15796.34 Da        Isoelectric Point: 10.6146

>NTDB_id=812231 P8P68_RS06250 WP_049490203.1 1290649..1291062(-) (comGG/cglG) [Streptococcus sp. D7B5]
MWKKQKVKAGVLLYAVTMAAIFSLLLQFYLNRQVAHHKDFALNKEKLIAFAMAKRSKDKAEQESGERVFNLGKVRYQNTK
TGFTTSVRMNKGNYEFLFPPMKIQEKKTDKKEEVATDSSNQAGKKKSEEKPEKKDKS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=812231 P8P68_RS06250 WP_049490203.1 1290649..1291062(-) (comGG/cglG) [Streptococcus sp. D7B5]
GTGTGGAAAAAGCAAAAAGTTAAGGCAGGCGTTCTCTTATATGCAGTCACCATGGCAGCCATCTTTAGTCTGTTGTTGCA
GTTTTATTTAAATCGGCAAGTCGCCCATCACAAAGACTTTGCCCTAAACAAAGAAAAGTTGATCGCTTTTGCCATGGCCA
AGCGAAGTAAGGATAAGGCTGAGCAAGAAAGTGGAGAACGAGTCTTTAACTTAGGAAAAGTCAGATATCAAAATACGAAA
ACAGGTTTTACAACAAGTGTTCGTATGAATAAGGGCAACTATGAATTTCTCTTTCCTCCGATGAAAATCCAAGAAAAGAA
AACGGATAAAAAGGAAGAGGTAGCGACTGATTCAAGCAATCAAGCAGGGAAGAAAAAATCAGAAGAAAAGCCTGAAAAGA
AAGACAAATCCTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus mitis NCTC 12261

77.869

89.051

0.693
  comGG/cglG Streptococcus mitis SK321

75.41

89.051

0.672
  comGG/cglG Streptococcus pneumoniae Rx1

78.632

85.401

0.672
  comGG/cglG Streptococcus pneumoniae D39

78.632

85.401

0.672
  comGG/cglG Streptococcus pneumoniae R6

78.632

85.401

0.672
  comGG/cglG Streptococcus pneumoniae TIGR4

78.632

85.401

0.672