Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   P9972_RS12505 Genome accession   NZ_CP121465
Coordinates   2560109..2560876 (-) Length   255 a.a.
NCBI ID   WP_046559881.1    Uniprot ID   -
Organism   Bacillus velezensis strain YA215     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2555109..2565876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9972_RS12485 (P9972_12485) - 2555311..2556123 (-) 813 WP_003152991.1 pyruvate, water dikinase regulatory protein -
  P9972_RS12490 (P9972_12490) ccpN 2556149..2556787 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  P9972_RS12495 (P9972_12495) glyS 2556888..2558927 (-) 2040 WP_014305438.1 glycine--tRNA ligase subunit beta -
  P9972_RS12500 (P9972_12500) glyQ 2558920..2559807 (-) 888 WP_003152984.1 glycine--tRNA ligase subunit alpha -
  P9972_RS12505 (P9972_12505) recO 2560109..2560876 (-) 768 WP_046559881.1 DNA repair protein RecO Machinery gene
  P9972_RS12510 (P9972_12510) - 2560913..2561056 (-) 144 WP_007408286.1 YqzL family protein -
  P9972_RS12515 (P9972_12515) era 2561212..2562117 (-) 906 WP_003152978.1 GTPase Era -
  P9972_RS12520 (P9972_12520) - 2562098..2562508 (-) 411 WP_003152976.1 cytidine deaminase -
  P9972_RS12525 (P9972_12525) - 2562632..2563006 (-) 375 WP_003152974.1 diacylglycerol kinase family protein -
  P9972_RS12530 (P9972_12530) ybeY 2562987..2563460 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  P9972_RS12535 (P9972_12535) - 2563461..2565593 (-) 2133 WP_046559882.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29263.92 Da        Isoelectric Point: 8.7950

>NTDB_id=812166 P9972_RS12505 WP_046559881.1 2560109..2560876(-) (recO) [Bacillus velezensis strain YA215]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNDGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSGEG
TFHFSIRDNGFICHRCFEKDPYRVPISPQTARLLRLFYYFDIGRLGSVSLKQKTKNEIKQVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=812166 P9972_RS12505 WP_046559881.1 2560109..2560876(-) (recO) [Bacillus velezensis strain YA215]
ATGCTGACTAAATGTGAAGGAATCGTGCTCCGTACGAATGACTACGGGGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGCGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCGTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGACTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGATTTATTTTTGACGGCGTATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAAGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGACGGGACTGACCCGGACGTGATCACATTCA
TCGTGCAGATGAAAATGCTCGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGCAAAAGCGGGGAAGGG
ACGTTTCATTTTTCGATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAGAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGTAGCGTCTCGTTAAAACAGAAAA
CCAAAAACGAAATTAAACAGGTCATTGATCTGTATTACGAGGAATATTCAGGACTTTATTTAAAGTCAAAACGGTTTTTA
GACCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.02

100

0.89