Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   P9972_RS08095 Genome accession   NZ_CP121465
Coordinates   1598149..1599048 (+) Length   299 a.a.
NCBI ID   WP_088037136.1    Uniprot ID   -
Organism   Bacillus velezensis strain YA215     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1593149..1604048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9972_RS08075 (P9972_08075) - 1593840..1595543 (+) 1704 WP_048367242.1 hypothetical protein -
  P9972_RS08080 (P9972_08080) - 1595540..1595821 (+) 282 WP_003154284.1 FlhB-like flagellar biosynthesis protein -
  P9972_RS08085 (P9972_08085) sucC 1595996..1597153 (+) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  P9972_RS08090 (P9972_08090) sucD 1597182..1598084 (+) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  P9972_RS08095 (P9972_08095) dprA 1598149..1599048 (+) 900 WP_088037136.1 DNA-processing protein DprA Machinery gene
  P9972_RS08100 (P9972_08100) topA 1599230..1601305 (+) 2076 WP_003154274.1 type I DNA topoisomerase -
  P9972_RS08105 (P9972_08105) trmFO 1601370..1602677 (+) 1308 WP_072588509.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  P9972_RS08110 (P9972_08110) xerC 1602747..1603664 (+) 918 WP_007409774.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32888.07 Da        Isoelectric Point: 8.3387

>NTDB_id=812151 P9972_RS08095 WP_088037136.1 1598149..1599048(+) (dprA) [Bacillus velezensis strain YA215]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFFSDPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRRKGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTPLLEKGRKIGIVGTRKPTEDGIKAAGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRVKGLTIGVIAGGFHHIYPRENLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYCGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=812151 P9972_RS08095 WP_088037136.1 1598149..1599048(+) (dprA) [Bacillus velezensis strain YA215]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCACTCTCTGTCTTTTTTTTCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGCAAAGGAATTACTGTCATT
CCGATTTCATCAAGCCGCTACCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCCGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGCTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGTAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGGAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCCCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTGCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

69.9

100

0.699
  dprA Lactococcus lactis subsp. cremoris KW2

40.143

93.311

0.375