Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RS158_RS13985 Genome accession   NZ_CP135712
Coordinates   2841764..2842393 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain TUM1586     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2836764..2847393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS158_RS13970 (RS158_13970) helD 2837006..2839060 (-) 2055 WP_012311774.1 DNA helicase IV -
  RS158_RS13975 (RS158_13975) yccF 2839183..2839629 (+) 447 WP_001261235.1 YccF domain-containing protein -
  RS158_RS13980 (RS158_13980) yccS 2839639..2841801 (+) 2163 WP_000875033.1 YccS family putative transporter -
  RS158_RS13985 (RS158_13985) sxy/tfoX 2841764..2842393 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RS158_RS13990 (RS158_13990) sulA 2842612..2843121 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  RS158_RS13995 (RS158_13995) ompA 2843477..2844529 (+) 1053 WP_024175778.1 porin OmpA -
  RS158_RS14000 (RS158_14000) matP 2844605..2845057 (-) 453 WP_000877166.1 macrodomain Ter protein MatP -
  RS158_RS14005 (RS158_14005) ycbZ 2845243..2847003 (+) 1761 WP_000156473.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=812149 RS158_RS13985 WP_000839153.1 2841764..2842393(-) (sxy/tfoX) [Escherichia coli strain TUM1586]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=812149 RS158_RS13985 WP_000839153.1 2841764..2842393(-) (sxy/tfoX) [Escherichia coli strain TUM1586]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACTGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCTCG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1