Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   P9972_RS01955 Genome accession   NZ_CP121465
Coordinates   382519..383472 (+) Length   317 a.a.
NCBI ID   WP_046559346.1    Uniprot ID   -
Organism   Bacillus velezensis strain YA215     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 377519..388472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9972_RS01930 (P9972_01930) - 377562..378995 (+) 1434 WP_161625271.1 HAMP domain-containing sensor histidine kinase -
  P9972_RS01935 (P9972_01935) rapC 379148..380296 (+) 1149 WP_014304340.1 Rap family tetratricopeptide repeat protein Regulator
  P9972_RS01940 (P9972_01940) phrC 380280..380399 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  P9972_RS01945 (P9972_01945) - 380550..380645 (-) 96 WP_012116800.1 YjcZ family sporulation protein -
  P9972_RS01950 (P9972_01950) - 380740..382104 (-) 1365 WP_060657805.1 aspartate kinase -
  P9972_RS01955 (P9972_01955) ceuB 382519..383472 (+) 954 WP_046559346.1 ABC transporter permease Machinery gene
  P9972_RS01960 (P9972_01960) - 383462..384409 (+) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  P9972_RS01965 (P9972_01965) - 384403..385161 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -
  P9972_RS01970 (P9972_01970) - 385183..386127 (+) 945 WP_003156329.1 siderophore ABC transporter substrate-binding protein -
  P9972_RS01975 (P9972_01975) - 386169..387593 (-) 1425 WP_048367708.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=812130 P9972_RS01955 WP_046559346.1 382519..383472(+) (ceuB) [Bacillus velezensis strain YA215]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMIFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=812130 P9972_RS01955 WP_046559346.1 382519..383472(+) (ceuB) [Bacillus velezensis strain YA215]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGACTGGGCAAGGCTCGGAATTTTGATTTCATTAATGATTTTTACGTCAGCGAGCCCGCTTGTGAAAATGTC
TATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGACCTGATC
CAAAACCTGTCATCTTGGCTGCAGGGAGATTTCTCACTGGTCGTTAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
AGCTCTCTTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533