Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   P9972_RS00250 Genome accession   NZ_CP121465
Coordinates   45551..45841 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain YA215     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40551..50841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9972_RS00210 (P9972_00210) darA 40569..40898 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  P9972_RS00215 (P9972_00215) - 40911..41351 (+) 441 WP_004264730.1 DUF327 family protein -
  P9972_RS00220 (P9972_00220) holB 41363..42352 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  P9972_RS00225 (P9972_00225) ricT 42355..43182 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  P9972_RS00230 (P9972_00230) yabA 43197..43556 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  P9972_RS00235 (P9972_00235) - 43616..44359 (+) 744 WP_014304191.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  P9972_RS00240 (P9972_00240) - 44346..44645 (+) 300 WP_004264714.1 GIY-YIG nuclease family protein -
  P9972_RS00245 (P9972_00245) rsmI 44620..45501 (+) 882 WP_014304192.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  P9972_RS00250 (P9972_00250) abrB 45551..45841 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  P9972_RS00255 (P9972_00255) metG 46324..48315 (+) 1992 WP_014304193.1 methionine--tRNA ligase -
  P9972_RS00260 (P9972_00260) - 48391..49158 (+) 768 WP_041481816.1 TatD family hydrolase -
  P9972_RS00265 (P9972_00265) - 49293..50618 (+) 1326 WP_088005470.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=812121 P9972_RS00250 WP_169510469.1 45551..45841(-) (abrB) [Bacillus velezensis strain YA215]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=812121 P9972_RS00250 WP_169510469.1 45551..45841(-) (abrB) [Bacillus velezensis strain YA215]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979