Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   P9875_RS20850 Genome accession   NZ_CP121464
Coordinates   4579991..4581367 (-) Length   458 a.a.
NCBI ID   WP_035820366.1    Uniprot ID   -
Organism   Janthinobacterium rivuli strain DEMB2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4574991..4586367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9875_RS20820 (P9875_20820) - 4575019..4575267 (+) 249 WP_158299998.1 DUF4952 domain-containing protein -
  P9875_RS20825 (P9875_20825) rraA 4575264..4575758 (-) 495 WP_035820358.1 ribonuclease E activity regulator RraA -
  P9875_RS20830 (P9875_20830) - 4575791..4577026 (-) 1236 WP_278316483.1 MFS transporter -
  P9875_RS20835 (P9875_20835) - 4577127..4577927 (+) 801 WP_278316484.1 helix-turn-helix transcriptional regulator -
  P9875_RS20840 (P9875_20840) fliD 4577924..4579309 (-) 1386 WP_278316485.1 flagellar filament capping protein FliD -
  P9875_RS20845 (P9875_20845) - 4579539..4579859 (-) 321 WP_225241901.1 PilZ domain-containing protein -
  P9875_RS20850 (P9875_20850) radA 4579991..4581367 (-) 1377 WP_035820366.1 DNA repair protein RadA Machinery gene
  P9875_RS20855 (P9875_20855) alr 4581447..4582538 (-) 1092 WP_278316486.1 alanine racemase -
  P9875_RS20860 (P9875_20860) lplT 4582786..4584048 (+) 1263 WP_278316487.1 lysophospholipid transporter LplT -
  P9875_RS20865 (P9875_20865) - 4584111..4585049 (-) 939 WP_278316488.1 DUF1853 family protein -
  P9875_RS20870 (P9875_20870) - 4585042..4585917 (-) 876 WP_278316489.1 uracil-DNA glycosylase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49020.57 Da        Isoelectric Point: 7.2144

>NTDB_id=812113 P9875_RS20850 WP_035820366.1 4579991..4581367(-) (radA) [Janthinobacterium rivuli strain DEMB2]
MAKVKTVYTCSDCGAVSNKWMGQCTSCNQWNTMVESLPETGGNNRYSNPQHMSLAQTAPVLSLDDIDAIDVPRFGTGIEE
FDRVLGGGMVAGGVVLIGGDPGIGKSTLLLQALANMSHHKRVLYVSGEESGAQIALRAKRLVIDAKELKLQAEIQLEKIL
STLNDLKPEVVVIDSIQTVYSDALSSAPGSVAQVRECAAQLTRAAKQTGVTIILVGHVTKEGALAGPRVLEHIVDTVLYF
EGDAHSSFRLVRAIKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDNQVPGSCVMVTQEGTRPLLVEIQALVDTSHL
PNARRLSVGLEQNRLAMLLAVAHRHAGIAAFDQDVFINAVGGVKITEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLA
GEIRPAPRGQERLREAAKLGFTLAVVPKSNLPKQVIEGLKVIGVERIDEAFNKLRDLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=812113 P9875_RS20850 WP_035820366.1 4579991..4581367(-) (radA) [Janthinobacterium rivuli strain DEMB2]
ATGGCAAAAGTCAAGACCGTCTACACCTGCAGCGACTGCGGCGCCGTCAGCAATAAATGGATGGGGCAATGCACCTCGTG
CAATCAGTGGAATACCATGGTGGAAAGCCTGCCCGAAACGGGCGGCAACAACCGCTATTCGAATCCGCAGCACATGTCGC
TGGCGCAGACGGCGCCCGTGCTGTCGCTTGACGATATCGACGCCATCGACGTGCCCCGTTTCGGCACGGGCATCGAGGAA
TTCGACCGTGTGCTGGGCGGCGGCATGGTGGCTGGCGGCGTCGTGCTGATCGGCGGTGACCCCGGCATCGGCAAGTCGAC
CCTGCTGCTGCAGGCGCTGGCGAACATGTCGCACCACAAGCGTGTGCTGTACGTCAGCGGCGAAGAGTCCGGCGCGCAAA
TCGCCCTGCGCGCCAAGCGCCTCGTCATCGACGCCAAGGAACTCAAATTGCAGGCCGAGATCCAGCTGGAAAAGATACTG
TCCACCTTGAACGACCTGAAACCGGAAGTGGTGGTGATCGATTCGATCCAGACCGTGTATTCGGACGCGCTCAGCTCGGC
GCCCGGTTCCGTGGCGCAAGTGCGCGAATGCGCTGCCCAGCTGACGCGGGCGGCCAAGCAGACGGGCGTGACCATCATTC
TGGTCGGCCACGTGACAAAAGAGGGCGCGCTGGCCGGTCCCCGCGTGCTCGAGCACATCGTCGACACGGTGCTGTATTTC
GAGGGCGACGCCCATTCCAGCTTCCGCCTGGTGCGCGCCATCAAGAACCGTTTCGGCGCCGTCAACGAACTGGGTGTGTT
TGCCATGACGGAAAAGGGCTTGAAGGGGGTGTCGAACCCGTCCGCGCTGTTCCTGTCGCAGCACGATAACCAGGTGCCCG
GTTCCTGCGTGATGGTGACGCAGGAAGGCACGCGTCCGCTGCTGGTGGAAATTCAGGCCCTCGTCGACACGAGCCACTTG
CCGAATGCGCGCCGCCTGTCCGTCGGCCTGGAGCAGAACCGCCTGGCCATGCTGCTGGCCGTGGCGCACCGCCACGCGGG
CATCGCCGCGTTTGATCAGGACGTGTTCATCAATGCCGTCGGCGGCGTGAAAATCACGGAGCCGGCGGCCGACCTGGCCG
TGTTACTGGCGATTAACTCGTCGATGCGCAACAAACCGCTGCCACGGGGATTGGTCGTGTTTGGCGAGGTGGGTCTGGCC
GGCGAAATCCGCCCCGCGCCACGGGGGCAGGAGCGCTTGCGCGAAGCGGCCAAGCTGGGCTTTACCCTGGCCGTGGTGCC
CAAGTCGAACTTGCCCAAGCAAGTCATTGAAGGCCTCAAGGTCATCGGCGTCGAGCGCATCGACGAAGCATTCAATAAAT
TGCGCGATCTGGAGTAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(361-452)

AAA domain (AAA_25)

(78-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.584

100

0.487
  radA Streptococcus mitis NCTC 12261

47.609

100

0.478
  radA Streptococcus pneumoniae Rx1

47.609

100

0.478
  radA Streptococcus pneumoniae D39

47.609

100

0.478
  radA Streptococcus pneumoniae R6

47.609

100

0.478
  radA Streptococcus pneumoniae TIGR4

47.609

100

0.478
  radA Streptococcus mitis SK321

47.391

100

0.476