Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   P9875_RS18165 Genome accession   NZ_CP121464
Coordinates   3991815..3994238 (-) Length   807 a.a.
NCBI ID   WP_278316174.1    Uniprot ID   -
Organism   Janthinobacterium rivuli strain DEMB2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3986815..3999238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9875_RS18130 (P9875_18130) - 3986827..3987627 (-) 801 WP_035819545.1 alpha/beta hydrolase -
  P9875_RS18135 (P9875_18135) - 3987686..3988381 (-) 696 WP_225241606.1 HAD family phosphatase -
  P9875_RS18140 (P9875_18140) - 3988414..3989175 (-) 762 WP_034756294.1 TSUP family transporter -
  P9875_RS18145 (P9875_18145) - 3989299..3989883 (-) 585 WP_278316171.1 Fic family protein -
  P9875_RS18150 (P9875_18150) - 3989880..3990098 (-) 219 WP_158300218.1 antitoxin VbhA family protein -
  P9875_RS18155 (P9875_18155) - 3990321..3991244 (+) 924 WP_278316172.1 LysR family transcriptional regulator -
  P9875_RS18160 (P9875_18160) - 3991248..3991769 (-) 522 WP_278316173.1 hypothetical protein -
  P9875_RS18165 (P9875_18165) comA 3991815..3994238 (-) 2424 WP_278316174.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  P9875_RS18170 (P9875_18170) - 3994443..3995276 (+) 834 WP_278316175.1 class I SAM-dependent methyltransferase -
  P9875_RS18175 (P9875_18175) - 3996461..3998446 (+) 1986 WP_278316176.1 helicase-related protein -
  P9875_RS18180 (P9875_18180) - 3998450..3998923 (-) 474 WP_035819555.1 T6SS effector amidase Tae4 family protein -

Sequence

Protein


Download         Length: 807 a.a.        Molecular weight: 87314.74 Da        Isoelectric Point: 10.0153

>NTDB_id=812112 P9875_RS18165 WP_278316174.1 3991815..3994238(-) (comA) [Janthinobacterium rivuli strain DEMB2]
MRTLILGFAAGAAWLQTQASLPSQAGTLLWVIAGVGIIASLALRHHAHWRCVVALAAGVGLGFYWAAWLAHAAMAPQLAL
ADEGQDIVVTGTVASLPYRFEQGVRFNFAVEKAVGAKVPPSIALSWYAGFRDAVTNDVGDVQPGERWRLTVRLQRPHGNA
NPMGFDYEAWLLEQGVRATGYVRPQPRADTPNVRLAAFVPGFGNVVEASRAALRARILRSLEGKQYAGVIVALVVGDQRA
IPQSDWQVFNRTGVSHLISISGLHITMIAGLFALGAGALWRRSFFTDWQLPLRLPAQKVAALAGALAAFLYVLLAGFGVP
AQRTLYMLLVVALALWMGRITSIGHILCLALGVVVLLDPWAVLWPGFWLSFGAVATMLYATAGRTAAPMPQQAGRWRRLR
AAVALGAHTQYVVTVGLVPLTMLLFSQVSLVSPVANALAIPIISLLVTPLSLAGSLLPAPLSDGLLLLAHAIVQMLAQVL
EWLGARRFAVWTAPAPPMWSFCWALFGTAWLLAPRGWPHRWAGMLGWLRLLTALPSSPPPGHMWITAFDVGQGMAVLVET
HEHRLLYDTGPAYSLDSDGASRVIVPYLRARGIGKLDGVIISHSDLDHAGGAMSLLENVQVGWLASSLFEGHPAVEARRA
LHQPYLHCMAGQSWTWEGVHFAMLHPLPASHMDIALKPNARSCTVKITAGKHFILLAGDIEAAQEAQLLARSMDGELAAD
VLLAPHHGSGTSSTQAFLNAVHPTLAIFQVGHRNRYKHPKAQVYARYGDMGIARLRTDVEGAVVLEFGEGIAVTRYRDSR
PRYWHGR

Nucleotide


Download         Length: 2424 bp        

>NTDB_id=812112 P9875_RS18165 WP_278316174.1 3991815..3994238(-) (comA) [Janthinobacterium rivuli strain DEMB2]
ATGCGCACCCTGATACTCGGCTTTGCCGCTGGCGCTGCCTGGTTGCAGACGCAGGCAAGCTTGCCATCGCAGGCGGGCAC
GTTGCTGTGGGTGATCGCTGGCGTAGGGATTATTGCTAGTCTGGCGCTGCGCCACCACGCGCACTGGCGTTGCGTTGTTG
CGCTTGCCGCTGGCGTGGGACTGGGTTTTTACTGGGCCGCCTGGCTGGCCCATGCCGCCATGGCGCCGCAACTGGCGCTG
GCCGATGAAGGGCAGGACATTGTTGTCACGGGCACGGTAGCCAGTCTGCCATATCGCTTCGAGCAGGGCGTGCGCTTCAA
TTTTGCCGTGGAGAAGGCAGTTGGGGCGAAGGTGCCGCCCTCGATCGCGCTGTCCTGGTACGCGGGTTTTCGCGATGCAG
TGACGAACGATGTCGGCGACGTGCAGCCGGGCGAGCGCTGGCGGCTGACGGTGCGGCTGCAGCGTCCGCACGGCAATGCG
AACCCCATGGGTTTTGACTACGAAGCGTGGCTGCTGGAGCAGGGCGTGCGCGCCACGGGCTATGTACGGCCGCAGCCGCG
CGCGGATACGCCGAACGTGCGCCTGGCCGCCTTCGTGCCCGGCTTTGGCAACGTGGTGGAGGCCAGCCGCGCGGCCTTGC
GCGCGCGCATCTTGCGCAGCCTGGAAGGCAAGCAGTATGCGGGCGTGATCGTGGCGCTGGTGGTGGGCGACCAGCGCGCC
ATTCCCCAGTCCGACTGGCAAGTGTTCAACCGCACGGGCGTGAGCCATTTGATTTCCATCTCGGGTTTGCACATTACGAT
GATCGCGGGCCTGTTCGCGCTGGGCGCGGGCGCGCTGTGGCGCCGTTCATTCTTTACCGACTGGCAACTGCCCTTGCGCT
TGCCGGCGCAAAAGGTGGCGGCGCTGGCCGGCGCGCTGGCCGCGTTCTTGTACGTGCTGCTGGCCGGCTTTGGCGTGCCT
GCGCAGCGCACCTTGTATATGTTGCTGGTGGTCGCGCTGGCCCTGTGGATGGGACGCATCACCAGCATAGGGCATATCCT
GTGCCTGGCGCTGGGCGTGGTCGTGCTGCTCGACCCGTGGGCCGTGCTGTGGCCCGGTTTCTGGCTGTCGTTTGGCGCTG
TCGCCACCATGCTGTACGCGACGGCAGGCCGCACCGCGGCGCCCATGCCGCAGCAAGCTGGACGCTGGCGCCGCCTGCGC
GCGGCCGTGGCGCTGGGCGCGCACACGCAGTATGTGGTGACGGTGGGGCTGGTGCCGTTGACGATGCTGCTGTTCTCGCA
AGTCTCGCTGGTCAGCCCCGTGGCCAATGCGCTGGCCATCCCCATCATCAGCCTGCTCGTCACGCCCTTGTCCCTGGCTG
GCAGCCTGCTGCCGGCGCCCCTGTCCGATGGGTTGCTGCTGCTGGCGCATGCCATCGTGCAGATGCTGGCGCAGGTGCTC
GAGTGGCTGGGCGCGCGCCGCTTTGCCGTGTGGACGGCGCCCGCGCCGCCAATGTGGAGTTTTTGCTGGGCATTGTTTGG
CACGGCATGGCTGCTGGCGCCACGCGGATGGCCGCATCGCTGGGCGGGCATGCTGGGCTGGCTGCGGCTGCTGACGGCCT
TGCCGTCCAGCCCGCCGCCGGGCCACATGTGGATCACGGCTTTTGACGTGGGACAAGGCATGGCCGTGCTGGTGGAAACG
CATGAACACCGCCTGCTGTATGACACGGGACCGGCCTACAGCCTCGATTCCGATGGCGCCAGCCGGGTCATCGTGCCTTA
CCTGCGCGCACGCGGCATAGGCAAGCTCGACGGCGTGATCATTTCCCACAGCGACCTCGATCACGCGGGCGGCGCCATGT
CCCTGCTGGAAAACGTGCAAGTGGGCTGGCTGGCCTCTTCCTTGTTCGAAGGCCACCCGGCCGTCGAGGCGCGGCGGGCG
TTACACCAGCCCTATCTGCATTGCATGGCGGGCCAGAGCTGGACGTGGGAAGGCGTGCACTTCGCCATGTTGCACCCATT
GCCGGCGAGCCACATGGACATTGCCCTGAAGCCGAACGCCCGCAGCTGCACCGTGAAAATCACGGCTGGCAAGCATTTTA
TCTTGCTGGCCGGCGATATCGAAGCGGCGCAGGAGGCGCAATTGCTTGCGCGCTCGATGGACGGCGAACTGGCCGCCGAC
GTGCTGCTGGCGCCGCATCACGGCAGTGGGACGTCTTCCACGCAGGCATTTTTGAACGCGGTCCATCCGACCCTGGCTAT
TTTTCAGGTCGGGCACAGGAATCGCTATAAACATCCGAAGGCGCAGGTGTATGCACGCTATGGCGACATGGGGATTGCGC
GGCTGCGCACGGATGTGGAAGGGGCGGTGGTGCTGGAGTTTGGAGAGGGGATAGCTGTGACGCGGTATCGGGACAGCCGG
CCGCGTTATTGGCATGGGCGCTAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(28-184)

Competence protein (Competence)

(233-516)

Metallo-beta-lactamase superfamily (Lactamase_B)

(550-746)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Ralstonia pseudosolanacearum GMI1000

46.953

100

0.487