Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   P9875_RS03660 Genome accession   NZ_CP121464
Coordinates   818278..819756 (+) Length   492 a.a.
NCBI ID   WP_278317599.1    Uniprot ID   -
Organism   Janthinobacterium rivuli strain DEMB2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 813278..824756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9875_RS03635 (P9875_03635) - 814714..815724 (+) 1011 WP_278317598.1 KpsF/GutQ family sugar-phosphate isomerase -
  P9875_RS03640 (P9875_03640) - 815724..816257 (+) 534 WP_035824109.1 HAD hydrolase family protein -
  P9875_RS03645 (P9875_03645) lptC 816300..816911 (+) 612 WP_035824112.1 LPS export ABC transporter periplasmic protein LptC -
  P9875_RS03650 (P9875_03650) lptA 816937..817518 (+) 582 WP_035824115.1 lipopolysaccharide transport periplasmic protein LptA -
  P9875_RS03655 (P9875_03655) lptB 817518..818273 (+) 756 WP_035824117.1 LPS export ABC transporter ATP-binding protein -
  P9875_RS03660 (P9875_03660) rpoN/rpoN1 818278..819756 (+) 1479 WP_278317599.1 RNA polymerase factor sigma-54 Machinery gene
  P9875_RS03665 (P9875_03665) raiA 819826..820188 (+) 363 WP_035824124.1 ribosome-associated translation inhibitor RaiA -
  P9875_RS03670 (P9875_03670) - 820324..821409 (+) 1086 WP_278317600.1 enoyl-CoA hydratase/isomerase family protein -
  P9875_RS03675 (P9875_03675) rapZ 821410..822273 (-) 864 WP_035824128.1 RNase adapter RapZ -
  P9875_RS03680 (P9875_03680) hprK 822391..823326 (-) 936 WP_034753337.1 HPr(Ser) kinase/phosphatase -
  P9875_RS03685 (P9875_03685) - 823363..823845 (-) 483 WP_034753339.1 PTS sugar transporter subunit IIA -

Sequence

Protein


Download         Length: 492 a.a.        Molecular weight: 54597.29 Da        Isoelectric Point: 5.1100

>NTDB_id=812103 P9875_RS03660 WP_278317599.1 818278..819756(+) (rpoN/rpoN1) [Janthinobacterium rivuli strain DEMB2]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQLLTDNPLLERLDDPLDRSLRLLSDGALSSTAAPAEAPPQPP
GQEAPAAPAEAETFDGEAGDSPAAAEGGDSDWSEASRGKAPDDEDSRPQLEAHHCTLREHLMEQMRVTVLELRDRALVEL
IIDALDDNGYLEESLDDILARLPEELEIDADEMRTALSLLQSFDPPGVGARNASECLALQIKRLPHIAMVTRRMALVIVE
KHLAWFAQRDFNKLKKALDCDEEDLREAQTVIRQCNPHPGAVFASDVSDYVVPDVVVKRARNGWQVTLNNDVMPRLRVNA
MYANLLKQGKGEGAMGAQLQEAKWLIKNMRQRFDTILRVAQAIVERQKNFFSHGAVAMRPLVLREIADTLGLHESTISRV
TTQKYMLTPHGMFELKYFFGSHVATEAGGEASSTAIRALIVQLTGAEDPKNPLSDSKIADMLGEQGMVIARRTVAKYREA
LKIPPVSLRKCL

Nucleotide


Download         Length: 1479 bp        

>NTDB_id=812103 P9875_RS03660 WP_278317599.1 818278..819756(+) (rpoN/rpoN1) [Janthinobacterium rivuli strain DEMB2]
ATGAAACAATCATTGCAGCTGCGCACTTCGCAGCACCTGGCACTGACGCCGCAGTTGCAGCAATCGATACGCCTGTTGCA
ATTGTCTACCCTGGAATTGCACCAGGAGCTAGAGCAACTGCTGACGGACAATCCCTTGCTCGAACGCCTCGACGATCCGC
TCGACCGTTCGCTGCGCCTGCTGTCCGATGGCGCCTTGAGTTCCACGGCGGCGCCGGCCGAAGCGCCGCCCCAGCCGCCA
GGCCAGGAAGCGCCCGCCGCGCCGGCCGAAGCGGAAACTTTTGATGGCGAGGCGGGCGACAGTCCGGCCGCAGCCGAGGG
CGGCGACAGCGACTGGAGCGAGGCGAGCCGGGGCAAGGCGCCCGACGACGAAGATTCGCGTCCGCAGCTGGAGGCCCATC
ACTGCACCCTGCGCGAACACCTGATGGAGCAGATGCGCGTGACGGTGCTCGAATTGCGCGACCGCGCGCTGGTCGAGCTG
ATCATCGACGCGCTCGACGACAATGGCTACCTGGAAGAGTCGCTCGACGACATCCTGGCGCGCCTGCCGGAAGAGCTGGA
AATCGACGCCGACGAGATGCGCACGGCCTTGTCGCTGCTGCAAAGTTTCGATCCGCCCGGCGTGGGCGCGCGCAATGCGT
CCGAATGCCTGGCCCTGCAAATCAAGCGCTTGCCGCACATCGCCATGGTGACGCGGCGCATGGCCCTCGTCATCGTGGAA
AAGCACCTGGCCTGGTTTGCCCAGCGCGATTTCAACAAGCTGAAAAAAGCCCTCGATTGCGACGAGGAAGACTTGCGCGA
AGCGCAGACGGTGATTCGCCAGTGCAATCCGCATCCGGGCGCCGTGTTCGCCTCGGACGTGTCCGATTACGTGGTGCCCG
ACGTCGTCGTCAAGCGCGCGCGCAATGGCTGGCAAGTGACCCTGAACAACGATGTGATGCCGCGCCTGCGCGTCAACGCC
ATGTACGCCAACCTGCTCAAGCAGGGCAAGGGCGAGGGCGCCATGGGCGCACAGTTGCAGGAAGCCAAGTGGCTGATCAA
GAATATGCGCCAGCGTTTCGACACCATCCTGCGCGTGGCACAGGCGATAGTAGAAAGACAAAAGAACTTTTTCTCGCATG
GGGCCGTTGCCATGCGCCCCCTTGTGCTCCGTGAAATAGCTGATACACTGGGTTTACACGAGAGTACTATCTCGCGGGTA
ACAACTCAAAAGTACATGCTGACCCCGCACGGCATGTTCGAGTTGAAATATTTCTTTGGTAGCCACGTCGCCACCGAAGC
GGGGGGCGAAGCGTCATCGACGGCGATACGGGCATTGATCGTGCAACTGACAGGAGCAGAAGACCCTAAAAATCCTTTAT
CCGACAGTAAGATTGCGGACATGCTGGGGGAACAAGGCATGGTGATTGCGCGACGTACTGTTGCCAAATACCGGGAAGCG
TTGAAAATTCCGCCAGTGAGCCTGCGTAAGTGTTTGTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(131-322)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(337-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

61.111

100

0.626