Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   P9J63_RS01345 Genome accession   NZ_CP121375
Coordinates   267452..267778 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain LRT     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 262452..272778
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9J63_RS01320 (P9J63_01320) hemC 263069..263986 (+) 918 WP_002159654.1 hydroxymethylbilane synthase -
  P9J63_RS01325 (P9J63_01325) - 263991..264758 (+) 768 WP_000897410.1 uroporphyrinogen-III synthase -
  P9J63_RS01330 (P9J63_01330) - 264767..265606 (+) 840 WP_032035824.1 hypothetical protein -
  P9J63_RS01335 (P9J63_01335) - 265616..266809 (+) 1194 WP_000681775.1 membrane protein -
  P9J63_RS01340 (P9J63_01340) - 266817..267257 (+) 441 WP_000661569.1 thioesterase family protein -
  P9J63_RS01345 (P9J63_01345) hns 267452..267778 (+) 327 WP_000801427.1 H-NS histone family protein Regulator
  P9J63_RS01350 (P9J63_01350) gspN 268110..268853 (+) 744 WP_264425888.1 type II secretion system protein N -
  P9J63_RS01355 (P9J63_01355) - 268853..269689 (+) 837 WP_000870031.1 type II secretion system protein N -
  P9J63_RS01360 (P9J63_01360) gspD 269731..272001 (+) 2271 WP_001196442.1 type II secretion system secretin GspD -
  P9J63_RS01365 (P9J63_01365) - 272042..272671 (+) 630 WP_031966137.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=812021 P9J63_RS01345 WP_000801427.1 267452..267778(+) (hns) [Acinetobacter baumannii strain LRT]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=812021 P9J63_RS01345 WP_000801427.1 267452..267778(+) (hns) [Acinetobacter baumannii strain LRT]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAGCCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1