Detailed information    

insolico Bioinformatically predicted

Overview


Name   tsaP   Type   Machinery gene
Locus tag   P9J61_RS00800 Genome accession   NZ_CP121370
Coordinates   157309..158463 (-) Length   384 a.a.
NCBI ID   WP_005129904.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain LRB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 152309..163463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9J61_RS00765 (P9J61_00765) - 152611..153030 (+) 420 WP_000224542.1 F0F1 ATP synthase subunit epsilon -
  P9J61_RS00770 (P9J61_00770) - 153092..153691 (-) 600 WP_000757144.1 hypothetical protein -
  P9J61_RS00775 (P9J61_00775) - 153837..153968 (-) 132 Protein_147 glutathione peroxidase -
  P9J61_RS00780 (P9J61_00780) - 153962..154120 (+) 159 Protein_148 TetR/AcrR family transcriptional regulator -
  P9J61_RS00785 (P9J61_00785) - 154226..155146 (+) 921 WP_001994180.1 DMT family transporter -
  P9J61_RS00790 (P9J61_00790) - 155538..156107 (-) 570 WP_000633612.1 Sua5/YciO/YrdC/YwlC family protein -
  P9J61_RS00795 (P9J61_00795) dprA 156158..157288 (-) 1131 WP_031944733.1 DNA-processing protein DprA Machinery gene
  P9J61_RS00800 (P9J61_00800) tsaP 157309..158463 (-) 1155 WP_005129904.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  P9J61_RS00805 (P9J61_00805) def 158586..159116 (+) 531 WP_001196539.1 peptide deformylase -
  P9J61_RS00810 (P9J61_00810) - 159153..159581 (+) 429 WP_000231981.1 DUF2946 family protein -
  P9J61_RS00815 (P9J61_00815) - 159653..161767 (+) 2115 WP_001120665.1 TonB-dependent copper receptor -
  P9J61_RS00820 (P9J61_00820) - 161821..162027 (+) 207 WP_000182542.1 hypothetical protein -
  P9J61_RS00825 (P9J61_00825) - 162097..163311 (-) 1215 WP_001177956.1 oxygenase MpaB family protein -

Sequence


Protein


Download         Length: 384 a.a.        Molecular weight: 42373.31 Da        Isoelectric Point: 8.5841

>NTDB_id=811977 P9J61_RS00800 WP_005129904.1 157309..158463(-) (tsaP) [Acinetobacter baumannii strain LRB]
MKKVFNGMVNFHALGIKKHLLALALCTGVAIGTIAEVHATSPNHNPPSLKSNAPNVYVVKRGDTLWDISGHFLNKPWRWP
EIWASNQHVKNPHWIYPGDRLLLCSLDGRPLVGKDEGDGCVGIIRRYTGQTTHLQPQVRVEALNNSVPVIPLEHIKQWLE
NSTILPADSITNTPYIVGTADQRVLAGKGQTIYARGQGLINGQRYAVYREGEPYYFTDNKGKKHSLGIELLQVASGVAVS
SEKDITTLELTDSYNAEVRRGDRVMPEEQATLPTLFYPVDAKQVTDGGKIIRVMGSIGRAAKNSVVTLDRGTTQGIQVGQ
VFDITQQGESIRDPKTKEVIQLPGQQIGSLMVFRTFDQLSYAYVLESDLPIKVGSSIQPPQFND

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=811977 P9J61_RS00800 WP_005129904.1 157309..158463(-) (tsaP) [Acinetobacter baumannii strain LRB]
ATGAAAAAGGTTTTTAACGGCATGGTTAATTTTCATGCCTTGGGGATAAAGAAGCATTTACTTGCCTTGGCGCTCTGTAC
AGGTGTCGCAATCGGTACGATAGCAGAGGTTCATGCAACCAGTCCGAACCATAATCCACCCTCACTTAAAAGTAATGCAC
CCAATGTATATGTTGTAAAACGTGGGGATACTTTATGGGATATTTCAGGACATTTTCTAAATAAACCATGGCGTTGGCCT
GAAATCTGGGCGAGCAACCAACATGTTAAAAATCCACACTGGATCTATCCGGGTGACCGATTACTATTATGTAGCCTAGA
TGGGCGTCCTTTAGTCGGTAAAGATGAGGGCGATGGTTGTGTAGGTATTATTCGCCGCTACACTGGGCAAACCACTCACT
TACAACCTCAAGTTCGCGTCGAAGCATTAAATAATAGTGTTCCGGTTATTCCACTTGAACATATTAAACAGTGGTTAGAG
AACAGTACTATTTTACCAGCCGACTCAATTACCAACACACCTTATATTGTTGGTACAGCCGATCAACGTGTACTTGCAGG
AAAAGGCCAGACTATTTATGCACGAGGACAAGGCTTAATTAATGGGCAGCGTTATGCAGTCTACCGAGAAGGTGAACCTT
ACTATTTCACAGACAATAAAGGTAAAAAGCATAGTTTAGGGATTGAGCTACTACAGGTTGCTTCAGGTGTTGCGGTCTCT
TCTGAAAAAGATATTACTACATTAGAACTAACAGATAGTTATAACGCTGAAGTACGTCGTGGCGATCGTGTTATGCCTGA
AGAACAAGCTACTTTGCCAACATTATTTTACCCAGTAGATGCGAAGCAAGTGACGGATGGTGGCAAGATTATTCGTGTCA
TGGGTTCAATTGGTAGAGCTGCAAAAAATAGTGTAGTGACTTTGGACCGCGGTACAACTCAGGGCATTCAAGTAGGTCAA
GTTTTTGATATTACTCAACAAGGTGAATCAATTCGCGACCCTAAAACCAAAGAAGTAATTCAACTTCCTGGCCAACAAAT
TGGCAGTCTAATGGTTTTTAGAACTTTTGATCAGCTAAGTTATGCTTATGTTTTAGAGAGCGATTTACCAATTAAGGTTG
GTTCAAGCATTCAGCCACCTCAATTTAATGATTAA

Domains


Predicted by InterproScan.

(57-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

99.74

100

0.997