Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   RS160_RS09600 Genome accession   NZ_CP135706
Coordinates   1948032..1949459 (-) Length   475 a.a.
NCBI ID   WP_264829400.1    Uniprot ID   -
Organism   Escherichia coli strain TUM1880     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1943032..1954459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS160_RS09570 (RS160_09570) yeeZ 1943087..1943911 (+) 825 WP_198455703.1 SDR family oxidoreductase -
  RS160_RS09575 (RS160_09575) yeeY 1943957..1944886 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  RS160_RS09580 (RS160_09580) yoeI 1945101..1945163 (+) 63 WP_010723108.1 membrane protein YoeI -
  RS160_RS09585 (RS160_09585) plaP 1945153..1946511 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  RS160_RS09590 (RS160_09590) tsuA 1946690..1947748 (+) 1059 WP_264829399.1 thiosulfate utilization transporter TsuA/YeeE -
  RS160_RS09595 (RS160_09595) tsuB 1947762..1947989 (+) 228 WP_000985278.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  RS160_RS09600 (RS160_09600) sbcB 1948032..1949459 (-) 1428 WP_264829400.1 exodeoxyribonuclease I Machinery gene
  RS160_RS09605 (RS160_09605) dacD 1949668..1950834 (+) 1167 WP_001310935.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  RS160_RS09610 (RS160_09610) sbmC 1950953..1951426 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  RS160_RS09615 (RS160_09615) yeeA 1951624..1952682 (+) 1059 WP_001200905.1 FUSC family protein -
  RS160_RS09620 (RS160_09620) tmaR 1952854..1953183 (+) 330 WP_000450409.1 DUF496 family protein -
  RS160_RS09625 (RS160_09625) - 1953284..1953466 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  RS160_RS27425 - 1953529..1953666 (+) 138 Protein_1885 transposase domain-containing protein -
  RS160_RS09635 (RS160_09635) - 1953955..1954047 (-) 93 Protein_1886 DUF957 domain-containing protein -
  RS160_RS09640 (RS160_09640) yeeW 1954081..1954275 (-) 195 WP_140416225.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54586.86 Da        Isoelectric Point: 5.2440

>NTDB_id=811972 RS160_RS09600 WP_264829400.1 1948032..1949459(-) (sbcB) [Escherichia coli strain TUM1880]
MMNDDKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNVAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=811972 RS160_RS09600 WP_264829400.1 1948032..1949459(-) (sbcB) [Escherichia coli strain TUM1880]
ATGATGAATGACGATAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAGCTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
TCGCCGTTCCGGTTAAGCTGGTGCACATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581