Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   RS160_RS00290 Genome accession   NZ_CP135706
Coordinates   54419..54892 (-) Length   157 a.a.
NCBI ID   WP_001292266.1    Uniprot ID   -
Organism   Escherichia coli strain TUM1880     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 49419..59892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS160_RS00255 (RS160_00255) - 49734..50942 (-) 1209 WP_001339197.1 IS4-like element ISVsa5 family transposase -
  RS160_RS00260 (RS160_00260) - 51125..51334 (-) 210 WP_001192734.1 hypothetical protein -
  RS160_RS00265 (RS160_00265) - 51482..52087 (-) 606 WP_001439254.1 retron system putative HNH endonuclease -
  RS160_RS00270 (RS160_00270) - 52210..52431 (-) 222 WP_126125326.1 hypothetical protein -
  RS160_RS00275 (RS160_00275) - 52416..53607 (-) 1192 Protein_54 AAA family ATPase -
  RS160_RS00280 (RS160_00280) - 53727..54053 (-) 327 Protein_55 TA system toxin CbtA family protein -
  RS160_RS00285 (RS160_00285) - 54084..54419 (-) 336 WP_000939440.1 type IV toxin-antitoxin system YeeU family antitoxin -
  RS160_RS00290 (RS160_00290) radC 54419..54892 (-) 474 WP_001292266.1 RadC family protein Machinery gene
  RS160_RS00295 (RS160_00295) - 54922..55740 (-) 819 WP_001046748.1 DUF932 domain-containing protein -
  RS160_RS00300 (RS160_00300) - 55977..56930 (-) 954 WP_000290409.1 hypothetical protein -
  RS160_RS00305 (RS160_00305) - 57523..58137 (+) 615 WP_000772911.1 inovirus Gp2 family protein -
  RS160_RS00310 (RS160_00310) - 58255..58473 (+) 219 WP_001064742.1 helix-turn-helix transcriptional regulator -
  RS160_RS00315 (RS160_00315) - 58688..59473 (-) 786 WP_000766854.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17876.60 Da        Isoelectric Point: 8.6704

>NTDB_id=811941 RS160_RS00290 WP_001292266.1 54419..54892(-) (radC) [Escherichia coli strain TUM1880]
MSELILTPVFSVSEQRVIRRAMRLLEKYQRNPGESFLSSDATKTWLQLHLARQEREMFVVLYLDNQNRLLEHETLFLGTI
NSTEVHPREIVKSALRHNAAAAILAHNHPSGVAEPSRADRLITTNIVKTLDLVKVRVLDHFIIGAGDVLSFAERGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=811941 RS160_RS00290 WP_001292266.1 54419..54892(-) (radC) [Escherichia coli strain TUM1880]
ATGTCTGAACTGATACTAACACCGGTATTTTCGGTGAGTGAACAACGCGTTATCCGCCGTGCGATGCGTCTGCTGGAGAA
ATATCAACGCAATCCTGGCGAATCTTTTCTTTCCTCTGACGCCACAAAAACCTGGCTGCAACTGCATCTGGCACGACAGG
AGCGGGAAATGTTTGTTGTGCTCTACCTCGATAACCAGAACCGACTGCTGGAACACGAAACGCTATTTCTCGGCACGATT
AACAGCACGGAAGTACATCCCCGTGAGATTGTGAAATCTGCGCTACGGCACAATGCCGCAGCAGCGATCCTTGCGCATAA
CCATCCCTCCGGCGTGGCAGAACCCAGTCGGGCCGACAGACTTATTACAACGAATATTGTTAAGACACTGGATTTGGTGA
AAGTGAGGGTGCTGGATCATTTCATTATTGGGGCGGGGGATGTCCTCTCTTTTGCCGAACGGGGCTGGCTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.085

75.159

0.414