Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   OCUAC_RS16465 Genome accession   NZ_AP023077
Coordinates   3451814..3452140 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain OCU_Ac16a     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3446814..3457140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCUAC_RS16445 - 3446922..3447551 (-) 630 WP_000219964.1 FHA domain-containing protein -
  OCUAC_RS16450 gspD 3447592..3449862 (-) 2271 WP_072689260.1 type II secretion system secretin GspD -
  OCUAC_RS16455 - 3449904..3450740 (-) 837 WP_000870031.1 type II secretion system protein N -
  OCUAC_RS16460 gspN 3450740..3451483 (-) 744 WP_032035825.1 type II secretion system protein N -
  OCUAC_RS16465 hns 3451814..3452140 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  OCUAC_RS16470 - 3452335..3452775 (-) 441 WP_000661569.1 thioesterase family protein -
  OCUAC_RS16475 - 3452783..3453976 (-) 1194 WP_000681780.1 membrane protein -
  OCUAC_RS16480 - 3453986..3454825 (-) 840 WP_001230201.1 hypothetical protein -
  OCUAC_RS16485 - 3454834..3455601 (-) 768 WP_072689262.1 uroporphyrinogen-III synthase -
  OCUAC_RS16490 hemC 3455606..3456523 (-) 918 WP_072689293.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=81187 OCUAC_RS16465 WP_000801427.1 3451814..3452140(-) (hns) [Acinetobacter baumannii strain OCU_Ac16a]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=81187 OCUAC_RS16465 WP_000801427.1 3451814..3452140(-) (hns) [Acinetobacter baumannii strain OCU_Ac16a]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1

Multiple sequence alignment