Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilF   Type   Machinery gene
Locus tag   OCUAC_RS15325 Genome accession   NZ_AP023077
Coordinates   3202702..3203502 (-) Length   266 a.a.
NCBI ID   WP_180635462.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain OCU_Ac16a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3197702..3208502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCUAC_RS15305 - 3198767..3199465 (-) 699 WP_000058788.1 tetratricopeptide repeat protein -
  OCUAC_RS15310 hisS 3199494..3200786 (-) 1293 WP_072688792.1 histidine--tRNA ligase -
  OCUAC_RS15315 ispG 3200783..3201898 (-) 1116 WP_032009832.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  OCUAC_RS15320 - 3201920..3202711 (-) 792 WP_000405163.1 RodZ domain-containing protein -
  OCUAC_RS15325 pilF 3202702..3203502 (-) 801 WP_180635462.1 type IV pilus biogenesis/stability protein PilW Machinery gene
  OCUAC_RS15330 rlmN 3203518..3204750 (-) 1233 WP_000093084.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  OCUAC_RS15335 ndk 3204873..3205304 (-) 432 WP_000963851.1 nucleoside-diphosphate kinase -
  OCUAC_RS15340 iscX 3205418..3205618 (-) 201 WP_000524329.1 Fe-S cluster assembly protein IscX -
  OCUAC_RS15345 - 3205718..3206269 (-) 552 WP_000669565.1 phosphatase PAP2 family protein -
  OCUAC_RS15350 - 3206294..3207592 (-) 1299 WP_139284624.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30114.43 Da        Isoelectric Point: 9.2307

>NTDB_id=81180 OCUAC_RS15325 WP_180635462.1 3202702..3203502(-) (pilF) [Acinetobacter baumannii strain OCU_Ac16a]
MSTPKLKIMLCMGVAVALLASGCQTSQTVKKDPEKAVKVRTQLAAEYIRSGDLDSAKRSLDQALSVDSRDATANMMMGIL
LQQEGSKSNLEKAEHYFKRAISSEPDNAQARNNYGTYLYQMERYNDAIEQFRIAGATLGYDQRYQALENLGRIYLKLGDI
ASAEKTFKQALLANRDSYISMLELAEIFYLQQQIPAATQMYEQYVRTVGQKNQGARALWIGLRVARANTDKMGMQVLVNQ
LRALFPESPEYQRYLQLQYSTEAVWK

Nucleotide


Download         Length: 801 bp        

>NTDB_id=81180 OCUAC_RS15325 WP_180635462.1 3202702..3203502(-) (pilF) [Acinetobacter baumannii strain OCU_Ac16a]
TTGAGTACTCCGAAGTTGAAGATCATGTTATGTATGGGGGTTGCTGTTGCACTTTTGGCAAGTGGTTGCCAGACTTCGCA
AACGGTTAAAAAGGACCCGGAAAAAGCAGTAAAAGTGCGTACGCAGCTTGCTGCCGAATACATTCGTTCTGGTGACTTGG
ATTCTGCAAAGCGTTCTCTTGACCAAGCGTTAAGTGTCGATAGTCGTGATGCAACGGCAAATATGATGATGGGTATTTTA
TTGCAACAAGAAGGCAGTAAATCCAATTTAGAAAAAGCGGAACATTACTTTAAGCGTGCAATTTCGTCTGAACCAGACAA
TGCTCAGGCACGTAATAATTATGGTACGTATTTGTACCAAATGGAGCGTTATAATGATGCTATTGAGCAATTTCGTATTG
CTGGTGCAACATTAGGCTATGATCAACGTTACCAGGCTTTAGAAAATCTGGGGCGAATTTATTTAAAACTAGGCGATATT
GCGAGTGCTGAAAAAACATTCAAACAAGCACTTCTTGCTAACCGCGACTCTTACATTTCAATGTTAGAGTTAGCAGAAAT
TTTTTATTTGCAGCAGCAGATTCCGGCTGCTACACAAATGTATGAACAATATGTTCGTACAGTGGGGCAGAAAAATCAGG
GTGCACGCGCACTTTGGATTGGTTTAAGAGTGGCTCGAGCCAATACGGATAAAATGGGAATGCAAGTTTTAGTAAACCAG
TTACGTGCTTTATTCCCGGAAAGTCCAGAATATCAACGTTATTTGCAATTACAGTATAGTACTGAGGCCGTATGGAAATA
A

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_16)

(88-134)

Tetratricopeptide repeat (TPR_16)

(149-206)

Tetratricopeptide repeat (TPR_8)

(39-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilF Acinetobacter baumannii D1279779

99.248

100

0.992
  pilF Acinetobacter baylyi ADP1

73.462

97.744

0.718

Multiple sequence alignment