Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | OCUAC_RS09885 | Genome accession | NZ_AP023077 |
| Coordinates | 2074311..2074691 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836912.1 | Uniprot ID | A0AAP1R0C8 |
| Organism | Acinetobacter baumannii strain OCU_Ac16a | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2069311..2079691
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OCUAC_RS09855 | tadA | 2069430..2069933 (-) | 504 | WP_001997771.1 | tRNA adenosine(34) deaminase TadA | - |
| OCUAC_RS09860 | - | 2069940..2071064 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| OCUAC_RS09865 | ung | 2071061..2071774 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| OCUAC_RS09870 | - | 2071825..2072421 (-) | 597 | WP_000908452.1 | 6-carboxytetrahydropterin synthase | - |
| OCUAC_RS09875 | gspK | 2072651..2073610 (-) | 960 | WP_000301478.1 | type II secretion system minor pseudopilin GspK | - |
| OCUAC_RS09880 | xcpW | 2073610..2074311 (-) | 702 | WP_000594582.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| OCUAC_RS09885 | xcpV | 2074311..2074691 (-) | 381 | WP_000836912.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| OCUAC_RS09890 | - | 2074681..2075235 (-) | 555 | WP_000841368.1 | type II secretion system protein | - |
| OCUAC_RS09895 | - | 2075245..2075853 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| OCUAC_RS09900 | - | 2075891..2076664 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| OCUAC_RS09905 | - | 2076682..2077023 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| OCUAC_RS09910 | - | 2077035..2078015 (-) | 981 | WP_001075421.1 | DNA polymerase III subunit delta' | - |
| OCUAC_RS09915 | kdsB | 2078027..2078788 (-) | 762 | WP_000680466.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13965.16 Da Isoelectric Point: 9.8004
>NTDB_id=81172 OCUAC_RS09885 WP_000836912.1 2074311..2074691(-) (xcpV) [Acinetobacter baumannii strain OCU_Ac16a]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYSVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYSVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=81172 OCUAC_RS09885 WP_000836912.1 2074311..2074691(-) (xcpV) [Acinetobacter baumannii strain OCU_Ac16a]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATTCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATTCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
99.206 |
100 |
0.992 |