Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   OCUAC_RS09880 Genome accession   NZ_AP023077
Coordinates   2073610..2074311 (-) Length   233 a.a.
NCBI ID   WP_000594582.1    Uniprot ID   A0AAX0TJI0
Organism   Acinetobacter baumannii strain OCU_Ac16a     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2068610..2079311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCUAC_RS09850 - 2068917..2069360 (-) 444 WP_001246675.1 SRPBCC family protein -
  OCUAC_RS09855 tadA 2069430..2069933 (-) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -
  OCUAC_RS09860 - 2069940..2071064 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  OCUAC_RS09865 ung 2071061..2071774 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  OCUAC_RS09870 - 2071825..2072421 (-) 597 WP_000908452.1 6-carboxytetrahydropterin synthase -
  OCUAC_RS09875 gspK 2072651..2073610 (-) 960 WP_000301478.1 type II secretion system minor pseudopilin GspK -
  OCUAC_RS09880 xcpW 2073610..2074311 (-) 702 WP_000594582.1 type II secretion system minor pseudopilin GspJ Machinery gene
  OCUAC_RS09885 xcpV 2074311..2074691 (-) 381 WP_000836912.1 type II secretion system minor pseudopilin GspI Machinery gene
  OCUAC_RS09890 - 2074681..2075235 (-) 555 WP_000841368.1 type II secretion system protein -
  OCUAC_RS09895 - 2075245..2075853 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  OCUAC_RS09900 - 2075891..2076664 (-) 774 WP_000497298.1 TatD family hydrolase -
  OCUAC_RS09905 - 2076682..2077023 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  OCUAC_RS09910 - 2077035..2078015 (-) 981 WP_001075421.1 DNA polymerase III subunit delta' -
  OCUAC_RS09915 kdsB 2078027..2078788 (-) 762 WP_000680466.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26577.60 Da        Isoelectric Point: 9.5501

>NTDB_id=81171 OCUAC_RS09880 WP_000594582.1 2073610..2074311(-) (xcpW) [Acinetobacter baumannii strain OCU_Ac16a]
MIKNKYIHIRSIASRLAARSSSARLARASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQIHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVIKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide


Download         Length: 702 bp        

>NTDB_id=81171 OCUAC_RS09880 WP_000594582.1 2073610..2074311(-) (xcpW) [Acinetobacter baumannii strain OCU_Ac16a]
ATGATAAAAAATAAATATATTCACATCCGAAGCATTGCTTCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAGCTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCAAACCAAGGTGGGCAAATTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCATAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAGTGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCGCAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-49)

Type II secretion system (T2SS), protein J (T2SSJ)

(83-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

98.712

100

0.987

Multiple sequence alignment