Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   OCUAC_RS02335 Genome accession   NZ_AP023077
Coordinates   478039..478923 (+) Length   294 a.a.
NCBI ID   WP_000914776.1    Uniprot ID   A0A9P3CWB8
Organism   Acinetobacter baumannii strain OCU_Ac16a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 473039..483923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCUAC_RS02310 - 473437..474684 (-) 1248 WP_072688879.1 YihY family inner membrane protein -
  OCUAC_RS02315 wrbA 474972..475565 (+) 594 WP_001183355.1 NAD(P)H:quinone oxidoreductase -
  OCUAC_RS02320 - 475618..476193 (-) 576 WP_000543071.1 xanthine phosphoribosyltransferase -
  OCUAC_RS02325 - 476266..476979 (-) 714 WP_000201548.1 DUF3108 domain-containing protein -
  OCUAC_RS02330 - 477137..477808 (-) 672 WP_001193960.1 hypothetical protein -
  OCUAC_RS02335 tonB2 478039..478923 (+) 885 WP_000914776.1 energy transducer TonB Machinery gene
  OCUAC_RS02340 ybeY 479013..479489 (-) 477 WP_072688877.1 rRNA maturation RNase YbeY -
  OCUAC_RS02345 - 479499..480587 (-) 1089 WP_072688875.1 PhoH family protein -
  OCUAC_RS02350 miaB 480625..482076 (-) 1452 WP_072688873.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 294 a.a.        Molecular weight: 33650.54 Da        Isoelectric Point: 9.0935

>NTDB_id=81165 OCUAC_RS02335 WP_000914776.1 478039..478923(+) (tonB2) [Acinetobacter baumannii strain OCU_Ac16a]
MLKKRSLSIEPFYYWWQDRVFIAAIILAILLHIFVLLIHFAMPAPSEQSTKEIAISIRPTEDVIKHADFLAQADQQGSGA
FREAHRMSSNSPAPMPSDASTGEAQLETLEKVQQQRELKFEEKVLMTVLSWQKQAEESQRKKALEQLQSQFQAKAAMVAS
LEAQYLQRQQDFSRQQKIKTVDGIQAKKDASAAYLDKFREKVELYGNRYYPEEAKQQQLKGEVRLMVILNAQGGIRAIRL
LESSGHPVLDEAAKASVRRGAPFGRFDVNMKDISELRIIRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 885 bp        

>NTDB_id=81165 OCUAC_RS02335 WP_000914776.1 478039..478923(+) (tonB2) [Acinetobacter baumannii strain OCU_Ac16a]
ATGTTGAAAAAAAGAAGTCTATCCATAGAGCCTTTTTATTATTGGTGGCAAGACCGAGTCTTTATCGCTGCAATAATATT
AGCAATCTTACTGCATATTTTTGTGTTGCTCATCCATTTTGCGATGCCTGCTCCGTCAGAACAATCGACTAAAGAAATTG
CAATATCGATTCGTCCTACTGAAGATGTGATCAAGCATGCAGACTTTTTAGCTCAAGCCGATCAACAAGGTTCAGGGGCT
TTTCGGGAAGCTCATCGGATGTCGAGTAACTCTCCAGCGCCTATGCCAAGTGATGCTTCAACAGGAGAAGCTCAGCTAGA
AACTTTAGAAAAAGTGCAGCAACAAAGAGAACTTAAATTTGAAGAAAAAGTACTCATGACTGTATTGAGTTGGCAGAAAC
AAGCAGAGGAGAGCCAAAGAAAAAAAGCACTTGAACAATTACAAAGTCAGTTTCAGGCAAAAGCTGCCATGGTAGCGAGT
CTTGAAGCTCAGTATTTACAACGTCAGCAAGATTTTAGTCGCCAACAAAAGATAAAAACAGTAGATGGTATTCAAGCCAA
GAAAGATGCGTCAGCAGCTTATCTAGATAAATTTCGTGAAAAAGTAGAGCTTTATGGCAACCGTTATTATCCAGAAGAAG
CGAAACAGCAACAGTTAAAAGGTGAAGTTCGCCTTATGGTAATTTTGAATGCTCAAGGGGGAATTCGTGCAATTCGTTTG
CTTGAAAGCTCAGGTCATCCAGTTCTAGATGAAGCAGCAAAGGCATCGGTACGGCGTGGAGCGCCGTTTGGCCGTTTTGA
TGTAAATATGAAAGATATTTCAGAGCTTCGTATTATTCGTACATGGCGTTTTGATCCAGCTGAAGCTGAATTTGAAGTTC
ATTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

99.66

100

0.997

Multiple sequence alignment