Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   P8R55_RS09870 Genome accession   NZ_CP121285
Coordinates   1983746..1985554 (+) Length   602 a.a.
NCBI ID   WP_407325350.1    Uniprot ID   -
Organism   Lactobacillus johnsonii strain L16     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1978746..1990554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R55_RS09845 (P8R55_09825) - 1979128..1979910 (-) 783 WP_407325348.1 threonine/serine exporter family protein -
  P8R55_RS09850 (P8R55_09830) - 1979927..1981474 (-) 1548 WP_407325349.1 ABC-F family ATP-binding cassette domain-containing protein -
  P8R55_RS09855 (P8R55_09835) - 1981474..1981857 (-) 384 WP_014567847.1 hypothetical protein -
  P8R55_RS09860 (P8R55_09840) - 1982081..1982353 (+) 273 WP_014567848.1 hypothetical protein -
  P8R55_RS09865 (P8R55_09845) - 1982458..1983582 (-) 1125 WP_014567849.1 LCP family protein -
  P8R55_RS09870 (P8R55_09850) pepF 1983746..1985554 (+) 1809 WP_407325350.1 oligoendopeptidase F Regulator
  P8R55_RS09875 (P8R55_09855) - 1985623..1987134 (-) 1512 WP_407325351.1 L-lactate permease -
  P8R55_RS09880 (P8R55_09860) - 1987256..1988047 (-) 792 WP_011162511.1 metal ABC transporter permease -
  P8R55_RS09885 (P8R55_09865) - 1988047..1988706 (-) 660 WP_407325352.1 metal ABC transporter ATP-binding protein -
  P8R55_RS09890 (P8R55_09870) - 1988745..1989644 (-) 900 WP_004898012.1 metal ABC transporter solute-binding protein, Zn/Mn family -
  P8R55_RS09895 (P8R55_09875) - 1989945..1990223 (-) 279 WP_011162513.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68626.27 Da        Isoelectric Point: 4.5643

>NTDB_id=811613 P8R55_RS09870 WP_407325350.1 1983746..1985554(+) (pepF) [Lactobacillus johnsonii strain L16]
MAIPTRNEVSDDLKWDLSRVFKDDQEWEQEYNQVATEIKNLGRFKGNLAKSGQDLYEGITEILSVNRRLEKVYVYATMSS
DVDTSNTHYLGLVAKAQSLANQMSAAISFVDPEILSIPEETLAKFMQDEPRLKEYQHRLEQITKKRPHTLPASEEKIIAA
AGDAMGTSANTFNVLTNSDMEYGYVQDEDGEMVQLSDGLYSLLIQSQDRNVRKNAFDVMYASYGQFENSLASTLSGEVKA
HNFNAQVHKYNSAREAALSENGVPTAVYDTLVKEVNSHLNLLHRYVSLRKKILGLSDLQMYDMYVPLTGEPSLSYNFEEA
KNEARRALAPLGKDYLEHVDYIFNNRVIDVVESQNKVTGAYSGGSYDTDPYELLNWEDNLDSLYTLVHETGHSVHSWYTR
NTQPYVYGDYPIFVAEIASTTNENILTEYFLDKITDPKTRAFVLNHYLDSFKGTLFRQTQFAEFEQFIHEADANGQPLTA
DVLDEFYGNLNQRYYGDSVEPGGEIAKEWARIPHFYYNFYVYQYATGFAAATALANNVVHGTDEERTAYINFLKAGSSDY
PTEIMKRAGVDMTKADYLRDAFNTFEKRLNEFEKIVDELKTI

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=811613 P8R55_RS09870 WP_407325350.1 1983746..1985554(+) (pepF) [Lactobacillus johnsonii strain L16]
ATGGCTATTCCAACAAGAAATGAAGTATCTGATGATCTCAAATGGGATCTTAGTCGTGTTTTTAAAGACGATCAGGAATG
GGAACAAGAATATAATCAGGTCGCAACCGAAATTAAAAATTTAGGTAGATTTAAGGGAAATCTTGCTAAATCTGGTCAAG
ATTTATATGAAGGAATTACAGAAATTTTATCTGTAAATCGTCGTTTAGAAAAAGTGTACGTTTATGCTACTATGTCAAGC
GACGTTGATACTAGTAATACTCATTATCTAGGCCTCGTTGCTAAAGCTCAAAGCTTAGCTAACCAGATGAGCGCCGCTAT
CTCTTTTGTCGATCCTGAAATTTTATCTATCCCAGAAGAAACACTTGCTAAATTTATGCAAGATGAGCCCCGTTTAAAAG
AGTATCAACATCGACTTGAACAAATTACTAAGAAACGTCCTCATACTTTACCAGCAAGTGAAGAAAAAATTATTGCCGCT
GCTGGAGATGCAATGGGAACTTCCGCTAATACTTTCAATGTTTTAACTAATTCTGATATGGAATACGGCTATGTTCAAGA
TGAAGACGGAGAGATGGTCCAATTATCTGATGGCTTATATTCACTTCTAATTCAGTCACAAGATAGAAATGTTCGCAAAA
ATGCATTTGATGTTATGTATGCAAGCTATGGCCAGTTTGAAAATAGTCTCGCTTCAACTTTATCAGGTGAAGTAAAAGCC
CACAATTTTAATGCTCAAGTACATAAATATAATTCAGCTCGAGAGGCTGCTTTAAGTGAAAATGGCGTACCAACAGCTGT
TTACGATACATTGGTTAAAGAGGTAAATAGTCACCTCAACTTACTTCATCGCTACGTTAGTTTAAGAAAAAAGATTTTAG
GTCTTTCTGATTTACAAATGTATGATATGTATGTTCCATTAACAGGTGAGCCCAGTCTTTCTTATAACTTTGAAGAAGCA
AAAAATGAAGCTAGACGAGCCTTAGCGCCATTAGGAAAAGATTACCTCGAACATGTTGATTACATCTTTAATAATCGTGT
AATTGATGTGGTTGAAAGCCAAAATAAGGTAACAGGCGCTTATTCTGGTGGTTCCTATGATACTGATCCATATGAATTAT
TAAATTGGGAGGATAATCTTGATTCTCTATATACTCTAGTTCATGAAACTGGACACTCAGTGCATTCCTGGTATACAAGA
AATACTCAACCATATGTATATGGAGACTACCCAATTTTTGTTGCTGAAATTGCATCAACAACTAATGAAAATATTTTAAC
TGAATACTTCTTAGATAAAATTACCGATCCTAAAACACGCGCATTTGTTTTGAATCACTATCTTGATTCATTTAAGGGTA
CACTTTTCCGTCAAACACAATTTGCAGAATTTGAGCAGTTTATTCATGAAGCTGATGCAAATGGTCAACCATTAACTGCC
GATGTTCTTGATGAATTTTATGGCAATTTAAACCAAAGATATTACGGTGATAGTGTAGAACCGGGCGGAGAGATTGCTAA
AGAATGGGCCCGTATTCCTCACTTCTATTACAACTTCTATGTTTACCAATATGCAACAGGTTTTGCTGCTGCTACAGCCC
TTGCAAATAATGTTGTTCATGGTACGGACGAAGAACGTACAGCTTATATTAATTTCTTAAAGGCTGGTTCTTCAGATTAT
CCAACAGAAATAATGAAACGTGCCGGTGTCGATATGACAAAGGCTGATTACTTAAGAGACGCATTTAATACTTTTGAAAA
ACGACTTAATGAGTTTGAAAAAATCGTTGATGAATTGAAAACAATCTAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(203-583)

Oligopeptidase F (Peptidase_M3_N)

(113-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.515

98.671

0.508