Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   P8R49_RS18945 Genome accession   NZ_CP121266
Coordinates   3520558..3521247 (-) Length   229 a.a.
NCBI ID   WP_014481054.1    Uniprot ID   -
Organism   Bacillus subtilis strain 107105     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3515558..3526247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R49_RS18910 (P8R49_18910) flgN 3515738..3516220 (-) 483 WP_014481048.1 flagellar protein FlgN -
  P8R49_RS18915 (P8R49_18915) flgM 3516236..3516502 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  P8R49_RS18920 (P8R49_18920) yvyF 3516583..3517002 (-) 420 WP_014481050.1 TIGR03826 family flagellar region protein -
  P8R49_RS18925 (P8R49_18925) comFC 3517075..3517797 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  P8R49_RS18930 (P8R49_18930) comFB 3517761..3518057 (-) 297 WP_003227989.1 late competence protein ComFB -
  P8R49_RS18935 (P8R49_18935) comFA 3518117..3519508 (-) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  P8R49_RS18940 (P8R49_18940) fakBA 3519615..3520460 (-) 846 WP_014481053.1 DegV family protein -
  P8R49_RS18945 (P8R49_18945) degU 3520558..3521247 (-) 690 WP_014481054.1 two-component system response regulator DegU Regulator
  P8R49_RS18950 (P8R49_18950) degS 3521330..3522487 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  P8R49_RS18955 (P8R49_18955) - 3522704..3523357 (+) 654 WP_014481055.1 YigZ family protein -
  P8R49_RS18960 (P8R49_18960) - 3523357..3524349 (+) 993 WP_014481056.1 LCP family protein -
  P8R49_RS18965 (P8R49_18965) - 3524947..3525411 (+) 465 WP_225910700.1 hypothetical protein -
  P8R49_RS18970 (P8R49_18970) - 3525460..3525915 (+) 456 WP_014481057.1 hypothetical protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25848.54 Da        Isoelectric Point: 5.9446

>NTDB_id=811544 P8R49_RS18945 WP_014481054.1 3520558..3521247(-) (degU) [Bacillus subtilis strain 107105]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKINVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=811544 P8R49_RS18945 WP_014481054.1 3520558..3521247(-) (degU) [Bacillus subtilis strain 107105]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATCAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996