Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   P8632_RS11220 Genome accession   NZ_CP121263
Coordinates   2204660..2206033 (-) Length   457 a.a.
NCBI ID   WP_326514956.1    Uniprot ID   -
Organism   Staphylococcus hominis strain FSEL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2199660..2211033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8632_RS11205 (P8632_11195) cysE 2200819..2201448 (-) 630 WP_172457920.1 serine O-acetyltransferase -
  P8632_RS11210 (P8632_11200) gltX 2201832..2203286 (-) 1455 WP_002449039.1 glutamate--tRNA ligase -
  P8632_RS11215 (P8632_11205) - 2203567..2204637 (-) 1071 WP_002449026.1 PIN/TRAM domain-containing protein -
  P8632_RS11220 (P8632_11210) radA 2204660..2206033 (-) 1374 WP_326514956.1 DNA repair protein RadA Machinery gene
  P8632_RS11225 (P8632_11215) - 2206166..2208637 (-) 2472 WP_326514957.1 ATP-dependent Clp protease ATP-binding subunit -
  P8632_RS11230 (P8632_11220) - 2208653..2209660 (-) 1008 WP_002449052.1 protein arginine kinase -
  P8632_RS11235 (P8632_11225) - 2209653..2210216 (-) 564 WP_326514958.1 UvrB/UvrC motif-containing protein -
  P8632_RS11240 (P8632_11230) - 2210248..2210709 (-) 462 WP_002449017.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50424.80 Da        Isoelectric Point: 7.2139

>NTDB_id=811472 P8632_RS11220 WP_326514956.1 2204660..2206033(-) (radA) [Staphylococcus hominis strain FSEL1]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIIEKTSNPKHGVKTKETQAKVQKLNSIKHETTPRVQTDSKEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQKLNVLYITGEESLNQTKLRADRLEEDSSNLNVLAETDLEVIHQTVE
QERPDILVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVQNPSEMFLEERSTNVPGSTIVAAMEGTRPLLIEVQSLVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLSIIVATASSFKDKAVDGLDCYIGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRVIIPKTNIGGWTFPEDVQVVGVTTVHDALKYAFSNRSS

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=811472 P8632_RS11220 WP_326514956.1 2204660..2206033(-) (radA) [Staphylococcus hominis strain FSEL1]
TTGGCCAAGAAAAAAGTAATTTTCGAATGTATGGCTTGTGGATATCAGTCTCCTAAATGGATGGGAAAATGTCCAAATTG
TGGTGCTTGGAATCAAATGGAGGAAATTATTGAAAAGACTTCCAATCCAAAACATGGTGTAAAGACAAAAGAGACACAAG
CAAAAGTACAGAAATTAAATAGTATTAAGCATGAGACAACACCAAGAGTTCAAACGGACTCTAAAGAATTTAATCGTGTA
CTGGGTGGCGGAATTGTTAGTGGATCGCTCGTACTGATTGGCGGCGACCCAGGTATTGGGAAATCTACATTATTATTACA
GATTTGTGCATCGTTATCACAGAAACTTAATGTACTTTATATCACGGGTGAAGAATCACTAAATCAAACGAAATTGCGTG
CAGATCGTCTAGAGGAAGACTCTAGTAATTTAAATGTACTAGCTGAAACAGATTTAGAAGTTATTCATCAAACCGTGGAA
CAAGAGCGCCCAGATATACTTGTTGTCGATTCAATTCAAACGATTTATCATCCTGAGATTAGTTCAGCACCTGGCTCAGT
ATCACAAGTTCGAGAAAGTACACAAAGTTTAATGAATATTGCAAAACAAATGAATATCGCAACTTTTATAGTAGGTCACG
TAACAAAAGAAGGACAAATTGCTGGTCCAAGACTATTAGAACATATGGTAGATACAGTTTTATACTTCGAAGGTGATGAA
CACCATGCCTATCGAATTCTAAGAGCAGTTAAAAATCGTTTTGGTTCAACGAATGAAATGGGTATTTTTGAAATGAAACA
AAGTGGTTTGAAAGGTGTACAAAATCCTTCAGAAATGTTTTTAGAAGAACGCTCTACAAATGTTCCAGGATCAACAATTG
TGGCTGCTATGGAAGGCACACGACCACTATTGATTGAGGTGCAATCTCTAGTAACACCTACCACATTTAATAATCCAAGA
CGAATGGCCACAGGCATCGACCACAATCGACTTAGTTTGCTTATGGCTGTTTTAGAGAAAAAAGAAAATTATCTTTTACA
ACAACAAGATGCTTACATTAAAGTAGCGGGTGGAGTGAGATTGACTGAACCGGCTGTAGATTTAAGTATTATTGTAGCGA
CTGCTTCAAGTTTTAAAGATAAAGCCGTAGATGGTTTGGATTGTTATATTGGTGAAGTGGGATTAACTGGTGAAGTAAGA
CGAGTATCGCGTATTGAGCAACGTGTACAAGAAGCGGCAAAACTAGGATTTAAGAGAGTGATTATTCCCAAAACGAATAT
AGGTGGATGGACATTCCCAGAAGATGTTCAGGTCGTTGGCGTGACAACGGTACATGATGCCTTAAAATATGCGTTTAGTA
ATCGCTCATCATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(355-426)

AAA domain (AAA_25)

(74-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.132

99.781

0.65
  radA Streptococcus pneumoniae Rx1

59.161

99.125

0.586
  radA Streptococcus pneumoniae D39

59.161

99.125

0.586
  radA Streptococcus pneumoniae R6

59.161

99.125

0.586
  radA Streptococcus pneumoniae TIGR4

59.161

99.125

0.586
  radA Streptococcus mitis NCTC 12261

59.161

99.125

0.586
  radA Streptococcus mitis SK321

59.161

99.125

0.586