Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   P8T11_RS15245 Genome accession   NZ_CP121261
Coordinates   3419679..3420728 (-) Length   349 a.a.
NCBI ID   WP_268081160.1    Uniprot ID   -
Organism   Achromobacter spanius strain LIG8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3414679..3425728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8T11_RS15235 (P8T11_15235) - 3417146..3417337 (+) 192 WP_268081162.1 hypothetical protein -
  P8T11_RS15240 (P8T11_15240) - 3417410..3419608 (+) 2199 WP_268081161.1 phospholipase C, phosphocholine-specific -
  P8T11_RS15245 (P8T11_15245) pilA 3419679..3420728 (-) 1050 WP_268081160.1 signal recognition particle-docking protein FtsY Machinery gene
  P8T11_RS15250 (P8T11_15250) - 3421024..3421224 (+) 201 WP_268081159.1 hypothetical protein -
  P8T11_RS15255 (P8T11_15255) rsmD 3421273..3421839 (+) 567 WP_050448038.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  P8T11_RS15260 (P8T11_15260) coaD 3421898..3422401 (+) 504 WP_046807920.1 pantetheine-phosphate adenylyltransferase -
  P8T11_RS15265 (P8T11_15265) - 3422507..3422758 (+) 252 WP_006221659.1 YfhL family 4Fe-4S dicluster ferredoxin -
  P8T11_RS15270 (P8T11_15270) - 3422755..3423969 (+) 1215 WP_268081158.1 benzoate/H(+) symporter BenE family transporter -
  P8T11_RS15275 (P8T11_15275) - 3424037..3424423 (-) 387 WP_100854473.1 MOSC N-terminal beta barrel domain-containing protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 36216.70 Da        Isoelectric Point: 8.5380

>NTDB_id=811411 P8T11_RS15245 WP_268081160.1 3419679..3420728(-) (pilA) [Achromobacter spanius strain LIG8]
MPAPTVSVAPTAAPAPIVTPVTAPSPAPVPTPAPTPAPDPVAEAPKKSSWLSRLKQGLSRTGQSIGGIFVGVKVDENLFE
ELESALIMADAGLEATEKLLTALRARVKKERIEDPAKVKTALRQLLADHLRPLERGFNLTSAKPLVVMIAGVNGAGKTTS
IGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVSVISQDGGDPAAVAFDAVNAGRARGMGVVMVDTAGRLPTQ
LHLMEELKKIRRVIGKADASAPHEVLLVVDGNTGQNALAQIRAFDAAINLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPI
PVYWIGVGESLEDLQPFVADEFAGALLAD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=811411 P8T11_RS15245 WP_268081160.1 3419679..3420728(-) (pilA) [Achromobacter spanius strain LIG8]
ATGCCTGCGCCTACGGTTTCGGTTGCGCCGACTGCCGCGCCTGCTCCGATCGTAACGCCGGTGACTGCGCCATCCCCCGC
GCCGGTACCCACGCCAGCACCCACTCCAGCACCTGATCCCGTCGCCGAGGCGCCCAAGAAGTCGTCATGGCTGTCGCGCT
TGAAGCAGGGCTTGTCGCGCACCGGGCAGAGCATTGGCGGCATTTTCGTGGGCGTCAAGGTCGACGAAAACCTGTTCGAG
GAACTCGAATCGGCGCTCATTATGGCCGATGCGGGCCTGGAGGCCACCGAGAAGCTGCTGACCGCGCTGCGTGCGCGGGT
CAAGAAAGAACGCATTGAAGACCCCGCCAAGGTGAAGACGGCGCTGCGCCAGTTGCTGGCCGACCACCTGCGTCCGCTGG
AGCGCGGCTTCAACCTGACCAGCGCGAAGCCGCTGGTGGTGATGATTGCCGGCGTCAACGGCGCGGGCAAGACCACGTCC
ATCGGCAAGCTGGCGCACACGTTCCAGCGCCAGGGCGCCAGCGTGCTGCTGGCGGCGGGCGACACCTTCCGTGCCGCGGC
CCGTGAACAGCTGGTGGAATGGGGCAGCCGCAACAACGTCAGCGTGATTTCGCAGGATGGCGGCGACCCCGCCGCCGTGG
CGTTCGATGCCGTCAACGCCGGTCGCGCGCGGGGAATGGGCGTGGTCATGGTGGACACCGCCGGCCGCTTGCCCACGCAG
TTGCACCTGATGGAAGAGCTGAAAAAGATCCGCCGCGTCATCGGCAAGGCGGATGCATCGGCGCCGCACGAAGTGCTGTT
GGTGGTGGACGGCAACACCGGCCAGAACGCGCTGGCGCAGATTCGCGCCTTTGATGCGGCCATCAACCTGACGGGCCTGG
TCGTGACCAAGCTGGACGGCACCGCCAAGGGCGGCACGCTGGCCGCCGTGGCCGCGGGTAGCCAGGGCGTGCGGCCGATT
CCGGTGTATTGGATCGGCGTGGGCGAAAGCCTGGAAGACCTGCAGCCCTTCGTGGCTGATGAGTTCGCGGGCGCGCTGCT
GGCGGACTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(145-347)

SRP54-type protein, helical bundle domain (SRP54_N)

(63-124)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

58.17

87.679

0.51