Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   RS168_RS22710 Genome accession   NZ_CP135658
Coordinates   4596987..4597616 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain TUM10008     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4591987..4602616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS168_RS22690 (RS168_22690) ycbZ 4592388..4594148 (-) 1761 WP_000156531.1 Lon protease family protein -
  RS168_RS22695 (RS168_22695) matP 4594334..4594786 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  RS168_RS22700 (RS168_22700) ompA 4594862..4595902 (-) 1041 WP_000750416.1 porin OmpA -
  RS168_RS22705 (RS168_22705) sulA 4596259..4596768 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  RS168_RS22710 (RS168_22710) sxy/tfoX 4596987..4597616 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  RS168_RS22715 (RS168_22715) yccS 4597579..4599741 (-) 2163 WP_000875061.1 YccS family putative transporter -
  RS168_RS22720 (RS168_22720) yccF 4599751..4600197 (-) 447 WP_098704097.1 YccF domain-containing protein -
  RS168_RS22725 (RS168_22725) helD 4600320..4602374 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=811345 RS168_RS22710 WP_000839153.1 4596987..4597616(+) (sxy/tfoX) [Escherichia coli strain TUM10008]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=811345 RS168_RS22710 WP_000839153.1 4596987..4597616(+) (sxy/tfoX) [Escherichia coli strain TUM10008]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1