Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   OF512_RS17945 Genome accession   NZ_CP121215
Coordinates   4087025..4087462 (-) Length   145 a.a.
NCBI ID   WP_127462377.1    Uniprot ID   -
Organism   Paenibacillus elgii strain L146     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 4082025..4092462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OF512_RS17925 - 4083007..4083390 (+) 384 WP_204343403.1 TetR/AcrR family transcriptional regulator -
  OF512_RS17930 - 4083733..4085574 (+) 1842 WP_127462374.1 fibronectin type III domain-containing protein -
  OF512_RS17935 - 4085686..4086168 (-) 483 WP_127462375.1 DUF1772 domain-containing protein -
  OF512_RS17940 - 4086315..4086740 (-) 426 WP_127462376.1 MarR family winged helix-turn-helix transcriptional regulator -
  OF512_RS17945 nucA/comI 4087025..4087462 (-) 438 WP_127462377.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  OF512_RS17950 - 4087659..4089107 (-) 1449 WP_127462378.1 amidase -
  OF512_RS17955 - 4089264..4090529 (+) 1266 WP_127462379.1 MerR family transcriptional regulator -
  OF512_RS17960 trxA 4090624..4090944 (-) 321 WP_010496933.1 thioredoxin -
  OF512_RS17965 - 4091061..4091966 (-) 906 WP_127462380.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15964.27 Da        Isoelectric Point: 9.7416

>NTDB_id=811212 OF512_RS17945 WP_127462377.1 4087025..4087462(-) (nucA/comI) [Paenibacillus elgii strain L146]
MVKKLGKALFSILFLVSVLLASFFPVAGSNNVSFAASSYDYVLIFPRDRYPETGAHIKDAIAAGKSDVCTIERDGTRERR
AESLKGYPPKKGYDRDEWPMAMCLEGGKGADIRYVTPSDNRGAGSWVGNKLSKYSDGTRIKFIVN

Nucleotide


Download         Length: 438 bp        

>NTDB_id=811212 OF512_RS17945 WP_127462377.1 4087025..4087462(-) (nucA/comI) [Paenibacillus elgii strain L146]
ATGGTTAAGAAGTTGGGCAAGGCACTATTTTCGATTTTATTCCTCGTCTCGGTTTTACTGGCAAGTTTTTTCCCGGTTGC
AGGCTCGAATAACGTTTCCTTTGCGGCATCATCTTACGATTACGTTTTAATTTTTCCGAGAGACCGATACCCCGAAACCG
GAGCGCATATTAAAGATGCCATTGCAGCGGGCAAATCGGATGTATGTACTATCGAGCGCGACGGTACCCGTGAGCGGCGT
GCAGAGTCACTGAAAGGCTATCCGCCGAAGAAAGGCTACGATCGGGACGAATGGCCGATGGCGATGTGCTTGGAAGGGGG
AAAAGGCGCGGATATTCGGTACGTTACTCCGTCCGACAACCGGGGGGCAGGAAGCTGGGTAGGAAATAAGCTTTCCAAAT
ACTCGGACGGAACCAGAATAAAATTTATCGTAAACTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(47-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

55.469

88.276

0.49