Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   P7Y79_RS03955 Genome accession   NZ_CP121207
Coordinates   821339..823447 (-) Length   702 a.a.
NCBI ID   WP_039696785.1    Uniprot ID   A0A091BT47
Organism   Streptococcus ruminicola strain CNU_77-47     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 816339..828447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7Y79_RS03935 (P7Y79_03935) yihA 817374..817967 (+) 594 WP_074560304.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  P7Y79_RS03940 (P7Y79_03940) - 818104..819480 (+) 1377 WP_278007775.1 amino acid permease -
  P7Y79_RS03945 (P7Y79_03945) mmuM 819491..820435 (+) 945 WP_278007776.1 homocysteine S-methyltransferase -
  P7Y79_RS03950 (P7Y79_03950) - 820467..821135 (-) 669 WP_278007836.1 YoaK family protein -
  P7Y79_RS03955 (P7Y79_03955) clpC 821339..823447 (-) 2109 WP_039696785.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  P7Y79_RS03960 (P7Y79_03960) rplJ 824015..824518 (+) 504 WP_039696786.1 50S ribosomal protein L10 -
  P7Y79_RS03965 (P7Y79_03965) rplL 824587..824955 (+) 369 WP_004232036.1 50S ribosomal protein L7/L12 -
  P7Y79_RS03970 (P7Y79_03970) - 825101..825427 (+) 327 WP_278007777.1 DUF1648 domain-containing protein -
  P7Y79_RS03975 (P7Y79_03975) - 825460..826056 (-) 597 WP_205398910.1 TetR/AcrR family transcriptional regulator -
  P7Y79_RS03980 (P7Y79_03980) - 826307..826495 (+) 189 WP_278007778.1 hypothetical protein -
  P7Y79_RS03985 (P7Y79_03985) - 826536..827477 (-) 942 WP_157629087.1 polysaccharide deacetylase family protein -

Sequence

Protein


Download         Length: 702 a.a.        Molecular weight: 77300.17 Da        Isoelectric Point: 4.7266

>NTDB_id=811100 P7Y79_RS03955 WP_039696785.1 821339..823447(-) (clpC) [Streptococcus ruminicola strain CNU_77-47]
MANNQFYGRDPFGNMDDIFNQLMGNMGGYNSENKRYLINGREVTPEEFAQYRQTGKLPGNADYQEGAPTSAPKEDGILAK
LGTNLTERARNNELDPVIGRNKEIQETAEILSRRTKNNPVLVGDAGVGKTAVVEGLAQAIVNGDVPAAIKNKEIISIDIS
GLEAGTQYRGAFEENIQNMIKEVKDAGNIILFFDEIHQILGAGSTGGDSGSKGLADILKPALSRGELTVIGATTQDEYRN
TILKNAALARRFNEVKVNAPSAQDSFNILMGIRDLYEKHHNVILPDNVLKAAVDFSIQYIPQRSLPDKAIDLIDMTAAHL
AAQHPVTDVKSLEKEIAEQKEKQEAAAAKEDYEAALNAKVRIEELQKQIDNHTEDKKVTATVNDVAESVERLTGVPVSNM
GASDIERLKELASRLKGKVIGQDEAVDAVARAIRRNRAGFDEGNRPIGSFLFVGPTGVGKTELAKQLALDMFGSKDAIIR
LDMSEYSDRTAVSKLIGTTAGYVGYDDNNNTLTERVRRNPYSIVLLDEIEKADPQVITLLLQVLDDGRLTDGQGNTINFK
NTVIIATSNAGFGNEALTGQEDKDMKIMDRIAPYFRPEFLNRFNGIIEFSHLTKDDLNEIVDLMLAEVSKTIAKKGIDLV
VSDDAKQHLIEEGYDEAMGVRPLRRVIEQEIRDKITDFYLDHTDVKHLKADMVDGELVISEK

Nucleotide


Download         Length: 2109 bp        

>NTDB_id=811100 P7Y79_RS03955 WP_039696785.1 821339..823447(-) (clpC) [Streptococcus ruminicola strain CNU_77-47]
ATGGCAAACAATCAATTTTACGGAAGAGATCCTTTTGGAAATATGGATGATATCTTCAACCAATTAATGGGAAACATGGG
AGGCTATAACTCAGAAAATAAACGCTACCTAATCAATGGGCGCGAAGTAACCCCTGAAGAATTTGCTCAATACCGTCAAA
CTGGTAAACTCCCAGGAAATGCTGATTATCAAGAAGGCGCTCCTACTTCTGCACCTAAAGAAGATGGTATCTTGGCTAAA
CTTGGGACAAACTTAACTGAACGTGCTCGTAACAACGAACTCGATCCCGTTATCGGACGTAACAAGGAAATTCAAGAAAC
AGCTGAAATCTTGTCTCGTCGTACAAAGAACAACCCAGTTCTTGTCGGAGATGCTGGTGTTGGTAAGACAGCTGTCGTTG
AAGGATTAGCTCAAGCCATTGTTAACGGTGATGTACCTGCTGCTATCAAGAACAAAGAAATCATCTCAATTGATATTTCA
GGCCTTGAAGCTGGTACACAATACCGTGGTGCTTTCGAAGAAAACATCCAAAACATGATTAAAGAAGTCAAAGACGCTGG
TAATATCATCCTCTTCTTTGATGAAATTCATCAAATTCTTGGAGCTGGTTCAACTGGTGGCGACTCTGGTTCTAAAGGTC
TAGCAGATATTCTTAAACCTGCTCTCTCTCGTGGTGAATTGACTGTTATTGGTGCGACTACGCAAGACGAATACCGCAAT
ACCATTTTGAAAAATGCTGCGCTCGCTCGTCGTTTCAACGAAGTTAAAGTTAACGCTCCTTCTGCTCAAGACAGCTTTAA
CATCTTGATGGGTATTCGTGATTTGTACGAAAAACACCACAATGTTATCCTTCCAGATAACGTTTTGAAAGCTGCTGTTG
ACTTTTCAATCCAATACATTCCACAACGTAGTTTACCAGATAAAGCAATTGACTTAATCGATATGACTGCTGCTCACCTA
GCTGCACAACATCCTGTAACTGATGTTAAATCTTTGGAAAAAGAAATTGCAGAACAAAAAGAAAAACAAGAAGCCGCTGC
CGCTAAAGAAGATTACGAAGCAGCTCTTAATGCCAAAGTGCGTATCGAAGAATTGCAAAAACAAATCGATAATCACACTG
AAGACAAGAAAGTTACTGCTACCGTTAATGACGTTGCTGAGTCCGTTGAACGTCTAACTGGTGTGCCTGTTTCAAACATG
GGCGCAAGCGACATCGAACGTTTGAAAGAATTGGCTAGTCGTTTGAAAGGTAAAGTCATTGGTCAAGACGAAGCTGTAGA
TGCTGTTGCTCGTGCTATTCGCCGTAACCGTGCTGGTTTTGATGAAGGAAACCGACCAATTGGTAGCTTCCTCTTCGTAG
GTCCTACTGGTGTTGGTAAGACAGAACTTGCTAAACAATTGGCTCTTGATATGTTTGGTTCAAAAGATGCAATCATCCGC
CTAGACATGTCTGAGTACTCTGACCGCACAGCCGTTTCTAAGTTGATTGGTACAACTGCTGGTTATGTTGGTTACGATGA
CAACAATAACACACTTACTGAACGTGTTCGTCGTAATCCTTACTCAATCGTTCTTCTTGATGAAATTGAAAAAGCCGACC
CACAAGTTATTACACTTCTTCTTCAAGTTTTGGACGATGGTCGTTTGACTGATGGTCAAGGTAATACAATTAACTTCAAG
AACACTGTTATCATTGCTACATCTAACGCTGGCTTTGGTAATGAAGCTTTGACTGGTCAAGAAGACAAAGACATGAAGAT
TATGGATCGTATCGCTCCATACTTCCGTCCGGAATTCCTTAACCGTTTCAACGGTATCATCGAATTCTCTCACTTGACTA
AGGATGACTTGAACGAAATCGTTGACTTGATGCTAGCTGAAGTTAGCAAGACTATCGCTAAGAAAGGTATTGATCTAGTC
GTTAGCGATGATGCTAAACAACACCTTATCGAAGAAGGTTACGATGAAGCTATGGGTGTTCGACCACTCCGCCGTGTTAT
CGAACAAGAAATTCGCGATAAAATCACTGATTTCTACCTTGATCACACAGATGTTAAACACCTTAAAGCTGATATGGTTG
ACGGAGAACTTGTTATCAGCGAAAAATAA

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(612-683)

AAA domain (Cdc48 subfamily) (AAA_2)

(445-604)

AAA lid domain (AAA_lid_9)

(262-355)

ATPase family associated with various cellular activities (AAA) (AAA)

(120-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A091BT47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

48.212

99.573

0.48
  clpE Streptococcus mutans UA159

50.313

90.883

0.457
  clpE Streptococcus pneumoniae Rx1

49.449

90.456

0.447
  clpE Streptococcus pneumoniae D39

49.449

90.456

0.447
  clpE Streptococcus pneumoniae R6

49.449

90.456

0.447
  clpE Streptococcus pneumoniae TIGR4

49.371

90.598

0.447
  clpC Bacillus subtilis subsp. subtilis str. 168

45.345

94.872

0.43
  clpC Streptococcus pneumoniae TIGR4

44.127

89.744

0.396
  clpC Streptococcus pneumoniae Rx1

43.354

90.028

0.39
  clpC Streptococcus pneumoniae D39

43.354

90.028

0.39
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

43.296

88.177

0.382
  clpC Streptococcus thermophilus LMG 18311

43.226

88.319

0.382
  clpC Streptococcus mutans UA159

42.926

88.604

0.38
  clpC Streptococcus thermophilus LMD-9

43.112

87.892

0.379