Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   P7Y79_RS03800 Genome accession   NZ_CP121207
Coordinates   790469..792283 (+) Length   604 a.a.
NCBI ID   WP_278007761.1    Uniprot ID   -
Organism   Streptococcus ruminicola strain CNU_77-47     
Function   regulate competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 776017..807512 790469..792283 within 0


Gene organization within MGE regions


Location: 776017..807512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7Y79_RS03730 (P7Y79_03730) - 776017..777222 (+) 1206 WP_278007752.1 CCA tRNA nucleotidyltransferase -
  P7Y79_RS03735 (P7Y79_03735) - 777219..779087 (+) 1869 WP_278007753.1 ABC-F family ATP-binding cassette domain-containing protein -
  P7Y79_RS03740 (P7Y79_03740) - 779129..780868 (+) 1740 WP_278007754.1 ABC transporter ATP-binding protein -
  P7Y79_RS03745 (P7Y79_03745) - 780871..782640 (+) 1770 WP_278007755.1 ABC transporter ATP-binding protein -
  P7Y79_RS03750 (P7Y79_03750) queC 782807..783457 (+) 651 WP_074867853.1 7-cyano-7-deazaguanine synthase QueC -
  P7Y79_RS03755 (P7Y79_03755) queD 783457..783903 (+) 447 WP_278007756.1 6-carboxytetrahydropterin synthase QueD -
  P7Y79_RS03760 (P7Y79_03760) queE 783896..784609 (+) 714 WP_278007757.1 7-carboxy-7-deazaguanine synthase QueE -
  P7Y79_RS03765 (P7Y79_03765) queF 784758..785249 (+) 492 WP_039696752.1 preQ(1) synthase -
  P7Y79_RS03770 (P7Y79_03770) - 785323..786674 (+) 1352 WP_278007758.1 IS3 family transposase -
  P7Y79_RS03775 (P7Y79_03775) - 786725..787222 (-) 498 WP_039696754.1 DUF308 domain-containing protein -
  P7Y79_RS03780 (P7Y79_03780) gdhA 787459..788808 (+) 1350 WP_278007759.1 NADP-specific glutamate dehydrogenase -
  P7Y79_RS03785 (P7Y79_03785) - 788965..789474 (+) 510 WP_157629111.1 GNAT family N-acetyltransferase -
  P7Y79_RS03790 (P7Y79_03790) - 789471..789881 (+) 411 WP_278007760.1 peptide deformylase -
  P7Y79_RS03795 (P7Y79_03795) rcrR 790025..790465 (+) 441 WP_006531250.1 MarR family transcriptional regulator Regulator
  P7Y79_RS03800 (P7Y79_03800) rcrP 790469..792283 (+) 1815 WP_278007761.1 ABC transporter ATP-binding protein Regulator
  P7Y79_RS03805 (P7Y79_03805) rcrQ 792273..794045 (+) 1773 WP_278007762.1 ABC transporter ATP-binding protein Regulator
  P7Y79_RS03810 (P7Y79_03810) - 794145..794780 (+) 636 WP_278007763.1 GTP pyrophosphokinase family protein -
  P7Y79_RS03815 (P7Y79_03815) - 794783..795463 (+) 681 WP_039696761.1 response regulator transcription factor -
  P7Y79_RS03820 (P7Y79_03820) - 795472..796698 (+) 1227 WP_278007764.1 HAMP domain-containing sensor histidine kinase -
  P7Y79_RS03825 (P7Y79_03825) - 796743..797588 (-) 846 WP_278007765.1 aldo/keto reductase -
  P7Y79_RS03830 (P7Y79_03830) - 797654..798568 (-) 915 WP_074626696.1 LysR family transcriptional regulator -
  P7Y79_RS03835 (P7Y79_03835) - 799149..800174 (+) 1026 WP_278007766.1 uroporphyrinogen decarboxylase family protein -
  P7Y79_RS03840 (P7Y79_03840) - 800235..801113 (+) 879 WP_093814661.1 transporter substrate-binding domain-containing protein -
  P7Y79_RS03845 (P7Y79_03845) - 801123..801815 (+) 693 WP_278007767.1 amino acid ABC transporter permease -
  P7Y79_RS03850 (P7Y79_03850) - 801826..802509 (+) 684 WP_074867818.1 ABC transporter permease subunit -
  P7Y79_RS03855 (P7Y79_03855) - 802525..803283 (+) 759 WP_157629102.1 amino acid ABC transporter ATP-binding protein -
  P7Y79_RS03860 (P7Y79_03860) - 803504..804187 (+) 684 WP_039696770.1 amino acid ABC transporter permease -
  P7Y79_RS03865 (P7Y79_03865) - 804147..804824 (+) 678 WP_157629101.1 amino acid ABC transporter permease -
  P7Y79_RS03870 (P7Y79_03870) - 804830..805576 (+) 747 WP_274641809.1 amino acid ABC transporter ATP-binding protein -
  P7Y79_RS03875 (P7Y79_03875) - 805606..806478 (+) 873 WP_021142447.1 cysteine ABC transporter substrate-binding protein -
  P7Y79_RS03880 (P7Y79_03880) mvk 806634..807512 (+) 879 WP_166044294.1 mevalonate kinase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67067.03 Da        Isoelectric Point: 5.7778

>NTDB_id=811097 P7Y79_RS03800 WP_278007761.1 790469..792283(+) (rcrP) [Streptococcus ruminicola strain CNU_77-47]
MLKIFKRLTAKEIIMMIIAVLFVCLNVFLDLKIPDYMSDITSLLSTQGTKAKDIFAWNLDAPGMRMVLLSLGSFAASVVV
GFLAARIAASFSTRLRDDIFHSVLDFSDAEIKKFSIPSLLTRTTNDITQIQLVFTMGLQVITKGPIMAIWAITKIADKNH
EWLMVLVVAVAVMILMLIFLLMMVMPKQRMIQKLTDKLNSITRESLTGIRVVRAYNAESYQDGKFAKANDNVTNFNLFIN
RSMALMSPVMTSISSGMTLAIYWIGAFLIEDIAIPKDPTKIAGAMQDKVNIFSDMVVYSSYAMQVVIGFMMMIIVFFILP
RAVVAAGRINEVLDTKPSVLYPEESKVQPAEKGSVEFDDVSFRYSDHSEAVLEHVSFKAKAGDTVAFIGSTGSGKSTLVN
LIPRFYDASEGTIKVDGVNVRDYDHDTLHKIVGYIPQKAVLFSGDIASNMDMGDSNSSPLDDDKMWEALDLAQGKDFVES
KEGQLKAQVSQGGQNFSGGQKQRLAIARALARKPEIIIFDDSFSALDYKTDRILRSQLKERTADMTKLIVAQRISTIMDA
DQILVLDEGKVVGQGTHEELLANNEVYREIAYSQLSKEELENGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=811097 P7Y79_RS03800 WP_278007761.1 790469..792283(+) (rcrP) [Streptococcus ruminicola strain CNU_77-47]
ATGTTAAAAATTTTTAAACGTTTAACGGCAAAAGAAATCATCATGATGATTATTGCCGTCTTATTTGTGTGTTTGAATGT
TTTCTTGGATTTGAAAATTCCAGATTACATGTCTGACATCACATCCTTGCTCTCAACTCAAGGAACAAAAGCAAAAGATA
TTTTTGCTTGGAATCTAGATGCCCCAGGTATGCGTATGGTCTTGCTTTCTTTAGGAAGTTTTGCAGCCTCTGTAGTTGTC
GGATTCTTAGCCGCACGTATTGCAGCAAGTTTCAGTACGCGTTTGCGTGATGATATTTTCCATAGTGTTTTGGACTTTTC
AGATGCGGAAATCAAGAAATTTTCAATTCCAAGTCTTTTGACACGTACAACAAATGACATTACTCAAATTCAGTTGGTCT
TTACCATGGGACTTCAAGTTATTACCAAAGGACCAATTATGGCAATCTGGGCAATCACGAAGATTGCTGATAAAAACCAT
GAGTGGTTGATGGTGCTGGTTGTAGCAGTGGCTGTCATGATTTTGATGTTGATTTTCTTGCTCATGATGGTAATGCCAAA
ACAACGCATGATTCAAAAATTGACTGATAAATTGAACAGTATCACGCGTGAATCATTGACCGGTATCCGTGTTGTCCGTG
CTTACAATGCCGAAAGTTATCAAGATGGTAAATTTGCTAAAGCTAATGATAACGTGACAAACTTTAACCTCTTTATCAAC
CGTTCAATGGCTTTGATGTCGCCAGTTATGACAAGTATTTCAAGCGGGATGACTTTGGCCATTTATTGGATCGGTGCCTT
CTTGATTGAGGATATTGCTATTCCAAAAGATCCAACTAAAATCGCTGGTGCTATGCAAGATAAAGTTAATATCTTCTCAG
ATATGGTGGTTTATTCATCATATGCCATGCAAGTTGTTATTGGTTTTATGATGATGATTATTGTCTTCTTCATTCTTCCC
CGTGCAGTTGTTGCTGCTGGTCGTATCAATGAAGTTTTAGATACAAAACCATCAGTACTTTATCCAGAAGAAAGTAAAGT
TCAACCAGCCGAAAAAGGTTCTGTAGAATTTGATGATGTGTCTTTCCGATATAGCGATCATTCGGAAGCTGTTTTGGAAC
ATGTTTCCTTTAAAGCTAAAGCAGGTGATACGGTTGCCTTTATCGGATCAACAGGTTCTGGTAAATCTACTCTAGTTAAT
TTGATTCCTCGTTTTTATGATGCAAGTGAAGGAACAATCAAGGTTGATGGTGTCAATGTTCGTGATTACGATCATGACAC
CCTTCACAAGATTGTTGGTTACATTCCGCAAAAAGCTGTGCTCTTTAGTGGAGACATTGCTTCAAATATGGACATGGGTG
ACAGCAATAGTTCACCGCTTGATGATGACAAGATGTGGGAAGCACTTGATTTGGCACAAGGTAAAGACTTCGTTGAAAGT
AAAGAAGGTCAATTGAAAGCCCAAGTCTCTCAAGGTGGTCAAAACTTCTCAGGTGGTCAAAAACAACGTTTGGCAATTGC
GCGTGCACTTGCCCGTAAACCTGAAATTATCATCTTTGATGATTCATTCTCAGCGCTTGATTATAAGACTGACCGAATCC
TTCGTTCTCAATTGAAAGAACGTACAGCTGACATGACTAAGTTGATTGTTGCCCAACGTATTTCAACAATCATGGATGCC
GATCAAATCTTAGTCTTGGATGAAGGAAAAGTAGTTGGTCAAGGTACTCACGAAGAATTGCTTGCAAATAATGAAGTTTA
TCGTGAAATTGCCTACTCACAATTATCTAAGGAGGAATTAGAAAATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(16-270)

ABC transporter (ABC_tran)

(372-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

67.107

100

0.672