Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   P7Y79_RS00245 Genome accession   NZ_CP121207
Coordinates   53083..53805 (-) Length   240 a.a.
NCBI ID   WP_278007500.1    Uniprot ID   -
Organism   Streptococcus ruminicola strain CNU_77-47     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 48083..58805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7Y79_RS00235 (P7Y79_00235) - 50633..52069 (+) 1437 WP_278007852.1 isopeptide-forming domain-containing fimbrial protein -
  P7Y79_RS00240 (P7Y79_00240) - 52231..53061 (+) 831 WP_278007499.1 class C sortase -
  P7Y79_RS00245 (P7Y79_00245) treR 53083..53805 (-) 723 WP_278007500.1 trehalose operon repressor Regulator
  P7Y79_RS00250 (P7Y79_00250) treP 54001..55977 (+) 1977 WP_278007501.1 PTS system trehalose-specific EIIBC component -
  P7Y79_RS00255 (P7Y79_00255) treC 55989..57629 (+) 1641 WP_278007502.1 alpha,alpha-phosphotrehalase -
  P7Y79_RS00260 (P7Y79_00260) - 57615..57941 (-) 327 WP_278007503.1 hypothetical protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27691.78 Da        Isoelectric Point: 9.4382

>NTDB_id=811069 P7Y79_RS00245 WP_278007500.1 53083..53805(-) (treR) [Streptococcus ruminicola strain CNU_77-47]
MKKYEQVFKKIEQDITSGVYQAGDFLPTENELTQTYQMSRDTIRKALKLLAEAGLIQKIHGSGSQVIKHETIDFPVSQLT
SYKELVNNYGINSKTNVISIDKLIVDDKLAALTGFKKNSLVWRVIRQRVVDGTASVLDIDYLDKKIVPDMTREIAEQSIY
YYLEKQLHLIIAYAQKEITIDQLNDRDKLLLDIGAEHHVVSVKSKVYLANKQQFQFTESRHKLEKFRFVDFATRTNQKTS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=811069 P7Y79_RS00245 WP_278007500.1 53083..53805(-) (treR) [Streptococcus ruminicola strain CNU_77-47]
ATGAAAAAATACGAACAAGTTTTTAAAAAAATTGAACAAGATATTACATCAGGTGTTTATCAGGCTGGAGATTTCCTCCC
TACTGAAAACGAACTCACTCAAACTTATCAAATGAGCCGCGATACTATTCGAAAAGCCTTGAAATTGTTAGCCGAAGCAG
GCCTCATTCAAAAAATACATGGCTCTGGTTCACAGGTTATCAAACATGAAACCATTGATTTTCCAGTTTCTCAATTGACC
AGTTATAAAGAACTCGTCAATAATTACGGCATTAATTCTAAGACCAATGTTATTTCTATTGATAAGCTTATTGTCGATGA
TAAATTAGCTGCGCTGACTGGTTTTAAAAAGAATAGTTTAGTTTGGCGCGTGATTCGTCAACGAGTAGTTGATGGCACAG
CTTCTGTCCTTGATATTGATTACCTAGATAAAAAAATCGTGCCAGATATGACACGAGAAATAGCTGAGCAATCTATTTAT
TACTATCTTGAAAAACAACTTCACTTGATTATTGCTTATGCCCAAAAAGAGATCACCATTGACCAACTCAATGACCGTGA
TAAACTTCTTCTTGATATTGGTGCTGAGCACCATGTTGTTTCAGTCAAATCAAAAGTCTATCTTGCCAATAAACAACAAT
TCCAATTCACTGAAAGTAGGCATAAACTCGAAAAATTTCGCTTTGTTGATTTTGCTACACGAACTAACCAAAAAACTAGT
TAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(90-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

69.658

97.5

0.679