Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   P7F70_RS08745 Genome accession   NZ_CP121201
Coordinates   1735204..1736565 (-) Length   453 a.a.
NCBI ID   WP_115130841.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SP28     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1730204..1741565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7F70_RS08715 (P7F70_08720) rpsI 1730686..1731078 (-) 393 WP_017769585.1 30S ribosomal protein S9 -
  P7F70_RS08720 (P7F70_08725) rplM 1731105..1731551 (-) 447 WP_018380541.1 50S ribosomal protein L13 -
  P7F70_RS08725 (P7F70_08730) - 1731725..1732585 (-) 861 WP_278024069.1 DegV family protein -
  P7F70_RS08730 (P7F70_08735) - 1732700..1733215 (-) 516 WP_278024070.1 NYN domain-containing protein -
  P7F70_RS08735 (P7F70_08740) rlmB 1733235..1733984 (-) 750 WP_218653668.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  P7F70_RS08740 (P7F70_08745) - 1734418..1735143 (+) 726 WP_278024071.1 MerR family transcriptional regulator -
  P7F70_RS08745 (P7F70_08750) radA 1735204..1736565 (-) 1362 WP_115130841.1 DNA repair protein RadA Machinery gene
  P7F70_RS08750 (P7F70_08755) - 1736581..1737030 (-) 450 WP_278024072.1 dUTP diphosphatase -
  P7F70_RS08755 (P7F70_08760) - 1737169..1738131 (-) 963 WP_278024073.1 S41 family peptidase -
  P7F70_RS08760 (P7F70_08765) - 1738128..1738376 (-) 249 WP_278024074.1 hypothetical protein -
  P7F70_RS08765 (P7F70_08770) - 1738458..1739864 (-) 1407 WP_278024075.1 PTS transporter subunit EIIC -
  P7F70_RS08770 (P7F70_08775) - 1739861..1741531 (-) 1671 WP_278024076.1 alpha-glucosidase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49537.80 Da        Isoelectric Point: 6.5143

>NTDB_id=811018 P7F70_RS08745 WP_115130841.1 1735204..1736565(-) (radA) [Streptococcus pluranimalium strain SP28]
MAKKKSSFVCQECGYNSPKYLGRCPNCSAWSSFVEEVEVQEVKNARVSLTGEKTRPTKLKDVDSINYARTKTDMDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANRGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQNIRAEIE
KIKPDFLIIDSIQTIMSPEVSSVQGSVSQVREVTAELMNLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSGGLVQVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQESFIGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNSLQGIDIPNNIQVIGVSTVGEVLKKVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=811018 P7F70_RS08745 WP_115130841.1 1735204..1736565(-) (radA) [Streptococcus pluranimalium strain SP28]
ATCGCTAAGAAAAAATCGAGTTTTGTCTGTCAAGAGTGCGGTTATAACTCACCAAAATACTTAGGACGTTGTCCCAACTG
TTCGGCTTGGTCTTCCTTTGTCGAAGAAGTAGAGGTACAAGAGGTCAAAAATGCTCGCGTCAGTCTAACAGGTGAAAAAA
CACGTCCAACCAAGCTAAAAGATGTGGATTCTATCAACTATGCTCGTACTAAAACTGACATGGACGAATTTAACCGAGTG
TTAGGTGGGGGTGTTGTTCCAGGCAGTCTTGTCTTAATCGGTGGTGATCCCGGTATTGGGAAGTCAACGCTACTCCTCCA
AGTATCAACACAACTTGCCAATCGTGGGACAGTGCTTTACGTGTCCGGGGAAGAATCAGCAGAGCAGATAAAGCTACGCA
GTGAGCGTCTAGGTGATATTGATAATGAGTTTTACCTTTATGCCGAGACCAACATGCAGAATATCCGAGCGGAGATTGAA
AAAATCAAGCCAGATTTTCTCATTATTGACTCTATTCAAACCATCATGAGCCCTGAGGTTTCAAGTGTGCAGGGTTCGGT
ATCTCAAGTTCGAGAGGTTACTGCAGAGCTGATGAATTTAGCTAAGACCAATAATATTGCTACCTTTATCGTTGGTCATG
TAACCAAGGAAGGAACTCTAGCCGGACCTCGTATGCTGGAACACATGGTAGATACGGTGCTTTATTTTGAAGGGGAACGC
CATCATACCTTCCGTATCCTTCGTGCCGTTAAAAACCGTTTTGGTTCTACCAATGAAATTGGGATATTCGAGATGCAGTC
TGGTGGTTTGGTTCAAGTTTTAAATCCTAGCCAAGTCTTTTTAGAAGAGCGTTTAGATGGAGCGACAGGATCAGCTATTG
TCGTTACCATGGAGGGTTCGCGCCCTATTTTGGCGGAGGTTCAAGCTCTTGTGACGCCAACTGTTTTTGGAAATGCTAAA
CGTACGACCACAGGGCTAGACTTTAATCGGGTCAGCTTGATTATGGCGGTTCTTGAAAAACGATGCGGTTTGCTGCTGCA
GAATCAGGATGCCTACCTCAAGTCAGCGGGTGGCGTAAAACTGGATGAGCCAGCAATAGACCTTGCTGTCGCGGTAGCCA
TTGCTTCAAGTTACAAAGAAAAACCAACCAACCCACAAGAATCCTTTATCGGAGAAATTGGCTTAACAGGGGAAATTCGT
CGGGTAACTCGTATCGAACAACGTATTAATGAAGCTGCCAAGTTGGGCTTCACCAAAATCTACGCCCCTAAAAATTCCCT
CCAAGGCATTGATATCCCGAATAACATCCAAGTTATCGGTGTCTCAACCGTCGGAGAAGTTCTGAAAAAAGTGTTTGCTT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(68-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.962

100

0.89
  radA Streptococcus pneumoniae D39

88.962

100

0.89
  radA Streptococcus pneumoniae R6

88.962

100

0.89
  radA Streptococcus pneumoniae TIGR4

88.962

100

0.89
  radA Streptococcus mitis SK321

88.962

100

0.89
  radA Streptococcus mitis NCTC 12261

88.742

100

0.887
  radA Bacillus subtilis subsp. subtilis str. 168

61.589

100

0.616