Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   P7F70_RS08290 Genome accession   NZ_CP121201
Coordinates   1645813..1646532 (-) Length   239 a.a.
NCBI ID   WP_278024011.1    Uniprot ID   -
Organism   Streptococcus pluranimalium strain SP28     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1640813..1651532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7F70_RS08260 (P7F70_08265) rimP 1641976..1642449 (-) 474 WP_278025332.1 ribosome maturation factor RimP -
  P7F70_RS08265 (P7F70_08270) - 1642578..1643024 (-) 447 WP_115130745.1 pyridoxamine 5'-phosphate oxidase family protein -
  P7F70_RS08275 (P7F70_08280) trmB 1643304..1643939 (-) 636 WP_278024009.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  P7F70_RS08280 (P7F70_08285) - 1643936..1644721 (-) 786 WP_160544564.1 phosphotransferase family protein -
  P7F70_RS08285 (P7F70_08290) - 1644777..1645811 (-) 1035 WP_278024010.1 ABC transporter permease -
  P7F70_RS08290 (P7F70_08295) pptA 1645813..1646532 (-) 720 WP_278024011.1 ABC transporter ATP-binding protein Regulator
  P7F70_RS08295 (P7F70_08300) - 1646603..1647019 (+) 417 WP_160544569.1 HIT family protein -
  P7F70_RS08300 (P7F70_08305) - 1647019..1647321 (+) 303 WP_115130749.1 hypothetical protein -
  P7F70_RS08305 (P7F70_08310) - 1647461..1649971 (-) 2511 WP_278024012.1 GBS Bsp-like repeat-containing protein -
  P7F70_RS08310 (P7F70_08315) trmL 1650052..1650588 (-) 537 WP_199773995.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 26664.91 Da        Isoelectric Point: 4.4139

>NTDB_id=811015 P7F70_RS08290 WP_278024011.1 1645813..1646532(-) (pptA) [Streptococcus pluranimalium strain SP28]
MLKIDHLVGGYVNIPVLKDISFEVSSGEVVGLIGLNGAGKSTTISEIIGLLQPYQGSVTLDGLQLLENPESYRRKIGYIP
ETPILYEELTLQEHLDTVALAYGLGEQQELRQKLLQLFRLEDKLDWYPINFSKGMKQKVMIIAALMIEPSLLIVDEPFLG
LDPLAIRDLTTIIAEEKAKGTAVLMSTHVLDSAEKMCDRFVILHHGEILANGSLEELRQQFSLPTADLTDIYMQLTQEN

Nucleotide


Download         Length: 720 bp        

>NTDB_id=811015 P7F70_RS08290 WP_278024011.1 1645813..1646532(-) (pptA) [Streptococcus pluranimalium strain SP28]
ATGCTAAAAATTGATCATTTAGTTGGTGGCTACGTTAATATACCTGTTTTAAAGGACATTTCTTTTGAGGTTTCCTCAGG
AGAAGTTGTTGGCTTAATTGGGCTTAACGGAGCGGGGAAATCAACAACTATCAGTGAAATCATTGGACTTTTGCAACCTT
ATCAGGGAAGTGTGACTTTGGATGGCTTGCAATTGTTAGAAAATCCAGAAAGTTACCGTCGCAAAATAGGTTACATTCCT
GAGACGCCAATCTTATATGAAGAGTTGACCTTACAAGAACATTTGGATACAGTTGCCTTAGCTTATGGTTTAGGTGAGCA
GCAGGAATTACGACAAAAGCTGTTACAACTCTTTCGTTTAGAGGATAAATTAGACTGGTATCCCATTAATTTTTCAAAAG
GGATGAAGCAGAAAGTAATGATTATTGCAGCTCTCATGATTGAGCCAAGCTTATTGATTGTAGATGAGCCTTTTTTGGGA
TTAGATCCTTTAGCGATTAGAGATTTGACGACTATTATTGCAGAGGAAAAAGCTAAAGGCACAGCTGTTTTGATGAGTAC
TCATGTTCTGGATTCTGCTGAAAAAATGTGTGACCGTTTTGTCATTCTCCATCATGGTGAGATTCTAGCTAACGGTAGTC
TAGAAGAGTTACGACAACAATTTAGTCTACCAACAGCTGATTTGACTGATATTTATATGCAATTGACGCAGGAGAATTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

69.874

100

0.699
  pptA Streptococcus thermophilus LMD-9

69.038

100

0.69