Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   P8F79_RS11520 Genome accession   NZ_CP121172
Coordinates   2317322..2318293 (-) Length   323 a.a.
NCBI ID   WP_025905417.1    Uniprot ID   A0AAJ4SJJ8
Organism   Mammaliicoccus sciuri strain PC04     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2312322..2323293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8F79_RS11495 (P8F79_11490) - 2312877..2313398 (+) 522 WP_048539931.1 GrpB family protein -
  P8F79_RS11500 (P8F79_11495) murB 2313468..2314385 (+) 918 WP_048539932.1 UDP-N-acetylmuramate dehydrogenase -
  P8F79_RS11505 (P8F79_11500) - 2314430..2315467 (-) 1038 WP_048539933.1 ABC transporter substrate-binding protein -
  P8F79_RS11510 (P8F79_11505) - 2315570..2316370 (-) 801 WP_048539934.1 ATP-binding cassette domain-containing protein -
  P8F79_RS11515 (P8F79_11510) - 2316367..2317332 (-) 966 WP_048539935.1 iron chelate uptake ABC transporter family permease subunit -
  P8F79_RS11520 (P8F79_11515) ceuB 2317322..2318293 (-) 972 WP_025905417.1 ABC transporter permease Machinery gene
  P8F79_RS11525 (P8F79_11520) - 2318420..2318836 (-) 417 WP_048539936.1 FixH family protein -
  P8F79_RS11530 (P8F79_11525) nrdF 2318986..2319957 (-) 972 WP_048539937.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  P8F79_RS11535 (P8F79_11530) nrdE 2319986..2322091 (-) 2106 WP_048539938.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  P8F79_RS11540 (P8F79_11535) nrdI 2322054..2322452 (-) 399 WP_025905413.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35476.97 Da        Isoelectric Point: 10.7243

>NTDB_id=810850 P8F79_RS11520 WP_025905417.1 2317322..2318293(-) (ceuB) [Mammaliicoccus sciuri strain PC04]
MGKFLMRLDVLIILLVIATFFSIFIGVSEVKPLHILNLTDEQKNILVSSRIPRTVSIIISGSSLAICGLIMQQLTRNKFV
SPTTAGTMDWARLGILISLIAFPEANILLKLLFATLLSLFGTMLFMQILRRIQFKDVIFIPLVGIMLGNIVSSFSSFVAL
RTNAVQSIGNFMQGNFSIITSGRYEILYISIPLLILAFIFANQFTIAGMGKDFSVNLGLNYQKVVNIGLIIASIITALVV
VTVGMMPFLGLIIPNLVSIFRGDHLKNALPHTAVFGALFVMICDVIGRLIIFPYEITIGLTIGVIGSFIFIVLLMKGRSR
NAQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=810850 P8F79_RS11520 WP_025905417.1 2317322..2318293(-) (ceuB) [Mammaliicoccus sciuri strain PC04]
ATGGGAAAGTTTTTAATGCGTTTAGATGTTTTGATTATTTTATTAGTAATTGCAACGTTCTTCTCTATATTTATAGGTGT
TTCAGAAGTAAAACCATTACATATATTAAATTTAACAGACGAACAGAAGAACATTTTAGTATCAAGTAGAATTCCGAGAA
CAGTCAGTATTATTATCTCAGGTAGCTCGTTAGCTATTTGTGGACTGATTATGCAACAGCTTACAAGAAATAAATTCGTT
TCTCCAACAACTGCAGGGACAATGGATTGGGCCAGATTAGGTATATTAATTTCTCTTATCGCTTTTCCAGAAGCCAACAT
ACTACTTAAATTATTATTTGCTACATTATTAAGTTTATTTGGAACAATGCTATTCATGCAAATTCTCCGTAGAATTCAAT
TTAAAGATGTTATTTTCATACCATTAGTTGGTATTATGCTCGGAAACATAGTGTCAAGTTTTTCTTCTTTTGTTGCATTA
CGTACAAATGCTGTACAAAGTATTGGTAATTTTATGCAAGGTAATTTCTCAATTATTACAAGCGGTAGATATGAAATTCT
TTATATTAGTATTCCGTTATTGATTTTAGCATTTATATTTGCGAATCAATTTACGATTGCTGGTATGGGTAAAGATTTTA
GTGTGAATTTAGGACTTAATTATCAAAAAGTCGTCAATATCGGACTGATCATTGCCTCAATCATTACGGCACTTGTTGTT
GTAACAGTTGGTATGATGCCATTCTTAGGTTTAATTATTCCTAACTTAGTTTCAATATTCAGAGGAGATCATTTAAAAAA
TGCATTGCCACATACAGCTGTATTTGGTGCATTGTTTGTCATGATTTGTGATGTAATAGGTCGATTAATTATATTCCCTT
ATGAAATTACAATTGGTTTAACAATTGGTGTGATTGGTAGTTTCATATTTATAGTATTGCTGATGAAAGGACGTTCAAGA
AATGCTCAATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(14-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.104

98.142

0.502