Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   RRL06_RS01945 Genome accession   NZ_CP135502
Coordinates   421176..421853 (-) Length   225 a.a.
NCBI ID   WP_000178161.1    Uniprot ID   -
Organism   Escherichia coli strain isolateA     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 416176..426853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRL06_RS01930 (RRL06_01930) chiA 417543..420236 (+) 2694 WP_023149697.1 bifunctional chitinase/lysozyme -
  RRL06_RS01935 (RRL06_01935) bfd 420405..420599 (+) 195 WP_000289085.1 bacterioferritin-associated ferredoxin -
  RRL06_RS01940 (RRL06_01940) bfr 420671..421147 (+) 477 WP_000675504.1 bacterioferritin -
  RRL06_RS01945 (RRL06_01945) pilD 421176..421853 (-) 678 WP_000178161.1 prepilin peptidase GspO Machinery gene
  RRL06_RS01950 (RRL06_01950) gspM 421853..422314 (-) 462 WP_001295161.1 type II secretion system protein GspM -
  RRL06_RS01955 (RRL06_01955) gspL 422311..423474 (-) 1164 WP_001115238.1 type II secretion system protein GspL -
  RRL06_RS01960 (RRL06_01960) gspK 423489..424472 (-) 984 WP_001058522.1 type II secretion system minor pseudopilin GspK -
  RRL06_RS01965 (RRL06_01965) gspJ 424465..425052 (-) 588 WP_000610634.1 type II secretion system minor pseudopilin GspJ -
  RRL06_RS01970 (RRL06_01970) gspI 425045..425422 (-) 378 WP_001041743.1 type II secretion system minor pseudopilin GspI -
  RRL06_RS01975 (RRL06_01975) gspH 425419..425928 (-) 510 WP_001076046.1 type II secretion system minor pseudopilin GspH -
  RRL06_RS01980 (RRL06_01980) gspG 425936..426373 (-) 438 WP_001202874.1 type II secretion system major pseudopilin GspG -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24898.78 Da        Isoelectric Point: 7.9563

>NTDB_id=810763 RRL06_RS01945 WP_000178161.1 421176..421853(-) (pilD) [Escherichia coli strain isolateA]
MTMLLPLFILVGFIAGYFVNAIAYHLSPLEDKTALTFRQVLVHFRQKKYAWHDTVPLILCVAAAIACALAPFTPIVTGAL
FLYFCFVLTLSVIDFRTQLLPDKLTLPLLWLGLVFNAQYGLIDLHDAVYGAVAGYGVLWCVYWGVWLVCHKEGLGYGDFK
LLAAAGAWCGWQTLPMILLIASLGGIGYAIVSQLLQRRTITTIAFGPWLALGSMINLGYLAWISY

Nucleotide


Download         Length: 678 bp        

>NTDB_id=810763 RRL06_RS01945 WP_000178161.1 421176..421853(-) (pilD) [Escherichia coli strain isolateA]
ATGACAATGCTACTGCCGCTCTTCATTCTGGTTGGTTTTATTGCAGGTTATTTTGTTAATGCCATCGCCTATCACCTCTC
GCCGTTGGAGGATAAAACGGCGTTAACGTTTCGCCAGGTATTGGTTCATTTCAGGCAAAAAAAATATGCCTGGCATGATA
CAGTGCCCCTGATACTTTGTGTTGCTGCTGCTATCGCCTGCGCCCTGGCACCTTTCACGCCCATCGTGACTGGCGCACTC
TTTCTCTATTTCTGTTTCGTACTCACGCTCAGTGTTATTGATTTTCGCACTCAGCTCCTGCCCGACAAACTCACCTTACC
GCTGCTCTGGCTTGGCTTGGTATTTAATGCGCAGTATGGATTAATTGATTTACATGATGCGGTTTACGGCGCGGTAGCGG
GCTATGGGGTGCTGTGGTGTGTTTACTGGGGCGTCTGGTTAGTTTGTCACAAAGAGGGATTGGGCTACGGTGATTTCAAG
CTACTGGCCGCTGCAGGCGCATGGTGTGGCTGGCAAACGTTGCCAATGATACTGCTGATTGCCTCGCTGGGTGGCATTGG
TTACGCCATCGTTTCACAACTTCTGCAACGCCGGACTATAACCACTATCGCATTCGGCCCGTGGCTTGCGCTCGGCAGCA
TGATAAACCTGGGGTATCTGGCCTGGATCTCTTATTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(82-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

32.946

100

0.378