Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   P8F80_RS08065 Genome accession   NZ_CP121161
Coordinates   1617581..1619389 (-) Length   602 a.a.
NCBI ID   WP_326516106.1    Uniprot ID   -
Organism   Ligilactobacillus murinus strain PC39     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1612581..1624389
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8F80_RS08040 (P8F80_08040) mgtE 1612959..1614326 (-) 1368 WP_004048221.1 magnesium transporter -
  P8F80_RS08045 (P8F80_08045) - 1614342..1615238 (-) 897 WP_326516105.1 RluA family pseudouridine synthase -
  P8F80_RS08050 (P8F80_08050) - 1615216..1616034 (-) 819 WP_135997811.1 NAD kinase -
  P8F80_RS08055 (P8F80_08055) - 1616071..1616700 (-) 630 WP_004048224.1 GTP pyrophosphokinase -
  P8F80_RS08060 (P8F80_08060) - 1616906..1617535 (+) 630 WP_004048225.1 DsbA family protein -
  P8F80_RS08065 (P8F80_08065) pepF 1617581..1619389 (-) 1809 WP_326516106.1 oligoendopeptidase F Regulator
  P8F80_RS08070 (P8F80_08070) - 1619428..1620402 (-) 975 WP_135942334.1 competence protein CoiA -
  P8F80_RS08075 (P8F80_08075) - 1620495..1621244 (-) 750 WP_004048228.1 adaptor protein MecA -
  P8F80_RS08080 (P8F80_08080) spxA 1621379..1621777 (-) 399 WP_004048229.1 transcriptional regulator SpxA -
  P8F80_RS08085 (P8F80_08085) nrdG 1622134..1622811 (-) 678 WP_326516107.1 anaerobic ribonucleoside-triphosphate reductase activating protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68363.07 Da        Isoelectric Point: 4.7640

>NTDB_id=810721 P8F80_RS08065 WP_326516106.1 1617581..1619389(-) (pepF) [Ligilactobacillus murinus strain PC39]
MSEVTRLPKRSEVPLELTWDLTKIFATDAEFEEAFGQVVKAAEDFEQYKGTLENGAQAFLAALTAMLKLDRQLEVVYVYA
SMKNDEDTANAKYQALMARVQKLLADVSAKLAWFQPELLALAPEKLASYYQAEPRLNVYKTLVNDWTRLRAHVLSEKEEA
LLAGASDILGASANVFEVLNNADLKFPVVTDGSGSKVELSNGVYGKLLEATERPVRREAFEQLYTVYKQFRHTFAATLSA
HVRKHNFSAKLRNYQSAKEASLAQNNIPVAVYDTLVKTVNENLELLHDYVALRKDILGVDELHMYDMYTPLTGEPTLTFT
YEQAKKMTLEALSVLGEEYTTYVEKAFAERWIDVVANAGKRSGAYSGGAYDTAPYILLNWQDTLDNLFTLVHEMGHTMHS
YYTRTNQPYQYGDYSIFVAEIASTTNENLLTQYLLETQTDPKVRAYVLNHYLDGFKGTVYRQTQFAEFEAWIHEQDASQV
PLTADLMSDFYSKLNQRYYGDAVENDPEIAYEWSRIPHFYYNFYVYQYATGFGAASTLAERVLDEEPAHTEAYLNYLKAG
SSAAPLEVMKKAGVDMTDSQYLEKAFGIFKERLAELKELLAK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=810721 P8F80_RS08065 WP_326516106.1 1617581..1619389(-) (pepF) [Ligilactobacillus murinus strain PC39]
ATGAGTGAAGTAACACGTCTACCAAAAAGATCAGAGGTGCCACTCGAGCTTACTTGGGATCTGACTAAGATCTTTGCGAC
TGATGCAGAATTTGAAGAAGCATTTGGGCAAGTTGTTAAAGCAGCTGAAGATTTTGAACAATACAAAGGAACATTAGAAA
ATGGGGCCCAAGCCTTTTTAGCTGCTCTAACGGCAATGCTTAAGTTGGATCGTCAACTTGAAGTAGTCTATGTCTATGCA
AGCATGAAAAATGATGAGGATACTGCTAATGCTAAGTACCAAGCTTTGATGGCACGGGTCCAAAAGTTATTGGCTGATGT
TTCAGCTAAATTAGCTTGGTTTCAGCCTGAATTATTAGCTTTAGCACCAGAAAAATTAGCAAGCTATTATCAAGCTGAGC
CTAGATTGAATGTCTATAAAACATTAGTCAATGATTGGACTCGACTTCGTGCCCATGTCTTGAGTGAAAAAGAAGAAGCG
CTATTAGCAGGTGCAAGCGACATCTTAGGCGCTTCGGCTAATGTTTTTGAAGTTTTAAACAATGCTGATCTAAAATTCCC
CGTAGTAACTGATGGATCAGGTTCAAAAGTCGAGCTTTCAAATGGAGTCTACGGTAAATTGCTCGAAGCGACCGAGCGCC
CAGTTAGACGTGAAGCATTCGAACAGTTATACACTGTATATAAGCAGTTCAGACATACGTTTGCGGCTACCCTGTCTGCA
CATGTACGTAAGCATAATTTTTCAGCTAAATTACGTAATTATCAAAGTGCCAAGGAAGCTTCACTAGCCCAAAATAATAT
TCCAGTAGCTGTTTATGATACTTTAGTTAAAACAGTCAATGAAAATTTGGAGCTACTGCATGATTATGTAGCTTTACGTA
AGGATATCTTAGGTGTCGATGAGTTGCATATGTATGATATGTATACTCCCTTGACTGGTGAACCGACATTGACGTTTACT
TATGAGCAGGCTAAAAAGATGACCTTAGAAGCTTTGAGCGTCTTAGGCGAAGAATATACTACCTATGTAGAGAAGGCTTT
TGCTGAACGGTGGATCGATGTTGTTGCTAATGCAGGTAAGCGTTCGGGGGCCTATTCGGGTGGGGCCTATGATACTGCAC
CATATATTTTATTGAATTGGCAAGATACGCTAGATAATCTCTTTACATTAGTCCATGAGATGGGACACACGATGCACAGC
TACTATACACGGACTAATCAACCTTATCAATATGGGGATTATTCAATCTTTGTTGCTGAGATCGCATCAACGACAAACGA
AAACTTGTTGACCCAGTATTTGTTAGAGACCCAGACTGATCCTAAGGTACGGGCTTACGTATTGAATCACTATTTAGATG
GCTTTAAGGGAACCGTTTATCGGCAAACACAATTTGCTGAATTTGAAGCTTGGATCCATGAGCAAGATGCGTCACAAGTG
CCATTAACAGCAGATCTGATGTCAGATTTTTACAGTAAATTAAATCAACGCTACTATGGTGATGCAGTTGAAAATGACCC
AGAGATCGCATATGAATGGTCACGGATCCCGCATTTCTACTATAATTTCTATGTCTATCAATATGCAACTGGTTTTGGTG
CGGCCTCTACTTTAGCAGAGCGCGTCTTAGATGAAGAGCCTGCGCACACTGAAGCTTATTTGAACTACTTAAAAGCAGGT
AGTTCAGCGGCTCCATTAGAAGTAATGAAAAAAGCTGGTGTCGATATGACTGATAGTCAATATTTAGAGAAAGCTTTTGG
GATCTTTAAGGAACGTTTGGCTGAATTAAAAGAGCTATTAGCTAAATAG

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.626

98.505

0.528