Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   P8R99_RS09190 Genome accession   NZ_CP121160
Coordinates   1743128..1744102 (+) Length   324 a.a.
NCBI ID   WP_001008568.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain S5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1738128..1749102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R99_RS09150 - 1738819..1739184 (+) 366 WP_000285373.1 DUF1033 family protein -
  P8R99_RS09155 comYA 1739356..1740327 (+) 972 WP_000250799.1 competence type IV pilus ATPase ComGA Machinery gene
  P8R99_RS09160 comYB 1740221..1741264 (+) 1044 WP_228322108.1 competence type IV pilus assembly protein ComGB Machinery gene
  P8R99_RS09165 comGC/cglC 1741261..1741590 (+) 330 WP_000793380.1 competence type IV pilus major pilin ComGC Machinery gene
  P8R99_RS09170 comYD 1741565..1741978 (+) 414 WP_017646959.1 competence type IV pilus minor pilin ComGD Machinery gene
  P8R99_RS09175 comGE 1741950..1742249 (+) 300 WP_025195478.1 competence type IV pilus minor pilin ComGE -
  P8R99_RS09180 comGF 1742203..1742664 (+) 462 WP_001874060.1 competence type IV pilus minor pilin ComGF -
  P8R99_RS09185 comGG 1742642..1743013 (+) 372 WP_000601103.1 competence type IV pilus minor pilin ComGG -
  P8R99_RS09190 comYH 1743128..1744102 (+) 975 WP_001008568.1 class I SAM-dependent methyltransferase Machinery gene
  P8R99_RS09195 - 1744134..1745327 (+) 1194 WP_000047537.1 acetate kinase -
  P8R99_RS09200 - 1745479..1745685 (+) 207 WP_000798241.1 helix-turn-helix transcriptional regulator -
  P8R99_RS09205 - 1745744..1745881 (+) 138 WP_079263416.1 hypothetical protein -
  P8R99_RS09210 - 1745984..1746376 (+) 393 WP_001265365.1 hypothetical protein -
  P8R99_RS09215 - 1746445..1747110 (+) 666 WP_000008107.1 type II CAAX endopeptidase family protein -
  P8R99_RS09220 proC 1747131..1747901 (-) 771 WP_001867096.1 pyrroline-5-carboxylate reductase -
  P8R99_RS09225 pepA 1747971..1749038 (-) 1068 WP_001281326.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 37200.19 Da        Isoelectric Point: 4.4491

>NTDB_id=810691 P8R99_RS09190 WP_001008568.1 1743128..1744102(+) (comYH) [Streptococcus agalactiae strain S5]
MNFEKIETAYELILENIQTIENQLKTHIYDALIEQNSYYLGSSCDLDIVVVNNQKLRQLDLSQEEWRRTFQFIFIKSAQT
EQLQANHQFTPDSIGFILLFLLEELTSQETVDVLEIGSGTGNLAQTLLNNSSKELNYMGIEVDDLLIDLSASIAEIIGCS
VQFIQEDAVRPQILKESDVIISDLPVGYYPNDDIAKRYAVSSSKEHTYAHHLLMEQSLKYLKKDGIAIFLAPENLLTSPQ
SDLLKEWLKGYADVIAVLTLPETIFGSRQNAKSIFVLKKQAEQKPETFVYPLTDLQNRENMANFIENFQKWRRENSHYSK
NMIE

Nucleotide


Download         Length: 975 bp        

>NTDB_id=810691 P8R99_RS09190 WP_001008568.1 1743128..1744102(+) (comYH) [Streptococcus agalactiae strain S5]
ATGAATTTTGAAAAAATTGAGACAGCCTATGAGCTGATTTTAGAAAATATCCAAACGATTGAGAATCAATTAAAAACTCA
TATTTATGATGCCTTAATTGAACAGAACTCTTATTACCTTGGTTCAAGTTGTGATTTAGATATTGTTGTGGTGAATAACC
AAAAATTACGTCAACTTGACTTAAGTCAAGAAGAATGGCGTCGCACTTTCCAGTTCATTTTTATCAAATCTGCGCAAACA
GAGCAATTACAAGCTAATCATCAGTTTACGCCAGATAGTATTGGTTTTATCTTGTTATTTCTTTTGGAAGAATTAACGAG
TCAAGAGACAGTGGATGTCTTGGAAATTGGAAGTGGAACTGGGAATTTAGCTCAGACTCTCCTCAATAACAGCTCGAAAG
AGTTAAATTATATGGGCATTGAAGTTGATGATCTTTTGATTGATCTATCAGCAAGCATTGCTGAAATTATAGGTTGTAGT
GTCCAATTTATCCAAGAGGATGCTGTTAGACCACAAATTTTGAAAGAAAGCGATGTAATCATTAGTGATTTACCAGTTGG
CTATTATCCTAATGATGATATTGCTAAACGATATGCTGTATCAAGTTCTAAAGAGCACACCTATGCTCACCATCTATTGA
TGGAGCAATCTCTTAAATATTTGAAAAAAGATGGAATCGCTATATTTTTAGCACCCGAAAACCTTTTAACAAGTCCACAA
AGTGATTTGCTGAAGGAGTGGTTAAAAGGATATGCAGATGTCATTGCCGTTTTAACTCTACCAGAAACTATTTTTGGAAG
TCGTCAAAATGCGAAATCTATATTTGTTCTCAAGAAGCAAGCAGAACAAAAACCAGAAACCTTTGTATATCCGCTGACAG
ATTTGCAAAATCGTGAGAATATGGCAAACTTCATTGAAAATTTTCAAAAATGGAGAAGAGAAAATAGTCATTACTCAAAA
AATATGATAGAATAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(70-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

67.302

97.222

0.654
  comYH Streptococcus mutans UA140

67.302

97.222

0.654