Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   P8R99_RS03965 Genome accession   NZ_CP121160
Coordinates   796203..797231 (-) Length   342 a.a.
NCBI ID   WP_218042212.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain S5     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 791203..802231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R99_RS03945 - 792474..792989 (-) 516 WP_000919803.1 VanZ family protein -
  P8R99_RS03950 rlmN 792989..794095 (-) 1107 WP_017647066.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  P8R99_RS03955 - 794146..794724 (-) 579 WP_017647065.1 YutD-like domain-containing protein -
  P8R99_RS03960 - 794794..796128 (-) 1335 WP_017647064.1 bifunctional metallophosphatase/5'-nucleotidase -
  P8R99_RS03965 sepM 796203..797231 (-) 1029 WP_218042212.1 SepM family pheromone-processing serine protease Regulator
  P8R99_RS03970 - 797269..797862 (-) 594 Protein_786 CorA family divalent cation transporter -
  P8R99_RS03975 - 798023..798982 (-) 960 WP_017647058.1 Gfo/Idh/MocA family oxidoreductase -
  P8R99_RS03980 - 799197..801722 (-) 2526 WP_017648403.1 DEAD/DEAH box helicase -
  P8R99_RS03985 - 801715..801897 (-) 183 WP_278043356.1 hypothetical protein -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 37415.29 Da        Isoelectric Point: 10.3256

>NTDB_id=810665 P8R99_RS03965 WP_218042212.1 796203..797231(-) (sepM) [Streptococcus agalactiae strain S5]
MLKWWIIGFAFLLLVLASLVVRLPYYLEMPGGAYDIRSVLKVNKKADKAKGSYNFVAVSVSQATPAQVLYAWLTPFTELS
SKEETTGGFSNDDYLRINQFYMETSQNESIYQALKLANKQVSLTYKGVYVLNLAKNSTFKDRLHLADTVTGVNGKSFKNS
SQLIKYVAALHLGDKVKVQYTSQGKKKESVGKVIKLSNGKNGIGIGLTDHTEVSSDVPVDFNTEGVGGPSAGLMFTLAIY
DQLVKEDLRKGRKIAGTGTIEQNGHVGDIGGAGLKVVSAAKKGMDIFFVPNNPIDKKAKKGKTKVQTNYQEAKAAAKRLG
TKMKIVPVQNVQQAIDYLKKTK

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=810665 P8R99_RS03965 WP_218042212.1 796203..797231(-) (sepM) [Streptococcus agalactiae strain S5]
CTGCTTAAATGGTGGATTATAGGTTTTGCTTTTTTATTGTTAGTATTAGCAAGCCTTGTGGTGAGGCTACCTTATTATTT
GGAAATGCCAGGTGGAGCTTATGATATCCGTTCGGTATTGAAAGTGAATAAAAAGGCTGATAAAGCTAAGGGTTCGTACA
ATTTTGTAGCGGTATCTGTCAGTCAAGCAACGCCAGCTCAGGTTCTTTATGCTTGGTTAACTCCTTTTACAGAATTATCT
AGTAAAGAGGAGACAACAGGTGGCTTTAGTAATGACGATTATCTCAGAATTAATCAATTCTACATGGAGACTTCTCAAAA
TGAGTCCATCTATCAAGCTTTAAAGTTAGCTAATAAGCAAGTATCTCTTACTTATAAAGGAGTTTATGTGCTTAACTTAG
CTAAAAATTCGACATTTAAAGATAGATTACATTTAGCTGATACAGTCACAGGAGTTAATGGCAAAAGTTTCAAAAATTCT
TCTCAACTTATCAAATATGTTGCAGCTCTTCATCTAGGTGATAAAGTAAAGGTACAATACACAAGTCAAGGTAAAAAGAA
AGAATCAGTTGGTAAAGTTATTAAACTATCAAACGGTAAAAATGGTATTGGTATCGGTTTGACAGACCATACAGAAGTAT
CATCTGATGTTCCTGTGGACTTTAATACTGAAGGTGTTGGAGGACCAAGTGCAGGTTTAATGTTTACTTTAGCGATTTAC
GACCAATTGGTTAAAGAAGATTTACGTAAAGGACGTAAGATTGCAGGTACTGGTACTATTGAGCAAAATGGACATGTTGG
CGATATTGGTGGAGCAGGTTTGAAAGTTGTTTCAGCGGCTAAAAAAGGAATGGATATTTTCTTTGTTCCTAATAATCCGA
TCGATAAAAAAGCTAAAAAAGGCAAAACAAAGGTTCAGACGAATTATCAAGAGGCAAAAGCAGCAGCTAAGCGATTAGGT
ACGAAGATGAAAATTGTACCAGTTCAAAATGTTCAGCAAGCTATTGATTATTTGAAAAAAACAAAATAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_2)

(122-188)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(226-292)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

69.322

99.123

0.687