Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OPA56_RS25185 Genome accession   NZ_AP026788
Coordinates   5138966..5139958 (-) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli strain IPCEC42     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5133966..5144958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OPA56_RS25175 (IPCEC42_48300) yieP 5136858..5137550 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  OPA56_RS25180 (IPCEC42_48310) mdtD 5137573..5139000 (+) 1428 WP_001280868.1 multidrug transporter subunit MdtD -
  OPA56_RS25185 (IPCEC42_48320) cytR 5138966..5139958 (-) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  OPA56_RS25190 (IPCEC42_48330) rbsK 5139962..5140891 (-) 930 WP_001361791.1 ribokinase -
  OPA56_RS25195 (IPCEC42_48340) rbsB 5141017..5141907 (-) 891 WP_264793734.1 ribose ABC transporter substrate-binding protein RbsB -
  OPA56_RS25200 (IPCEC42_48350) rbsC 5141932..5142897 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  OPA56_RS25205 (IPCEC42_48360) rbsA 5142902..5144407 (-) 1506 WP_000387762.1 ribose ABC transporter ATP-binding protein RbsA -
  OPA56_RS25210 (IPCEC42_48370) rbsD 5144415..5144834 (-) 420 WP_001296586.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=81065 OPA56_RS25185 WP_000224470.1 5138966..5139958(-) (cytR) [Escherichia coli strain IPCEC42]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=81065 OPA56_RS25185 WP_000224470.1 5138966..5139958(-) (cytR) [Escherichia coli strain IPCEC42]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACAGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGTAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATTGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCTGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACAACTATACACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTACAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment