Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   P8R98_RS10275 Genome accession   NZ_CP121159
Coordinates   2086423..2087148 (-) Length   241 a.a.
NCBI ID   WP_000912310.1    Uniprot ID   A0AB74H7X3
Organism   Streptococcus agalactiae strain S1     
Function   export ComS (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 2087485..2088965 2086423..2087148 flank 337


Gene organization within MGE regions


Location: 2086423..2088965
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8R98_RS10275 pptA 2086423..2087148 (-) 726 WP_000912310.1 ABC transporter ATP-binding protein Regulator
  P8R98_RS10280 - 2087485..2088965 (+) 1481 Protein_1973 IS1182-like element IS1563 family transposase -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26893.30 Da        Isoelectric Point: 4.5217

>NTDB_id=810632 P8R98_RS10275 WP_000912310.1 2086423..2087148(-) (pptA) [Streptococcus agalactiae strain S1]
MLKIENVTGGYVNIPVLKNISFEVNDGELVGLIGLNGAGKSTTINEIIGILRPYQGDITIDGISLEADQELYRKKIGFIP
ETPSLYEELTLREHLETVAMAYDIATDEVMERAQKLLEMFRLTDKLDWFPMHFSKGMKQKVMIICAFVVSPSLFIVDEPF
LGLDPLAISDLINLLAEEKAKGKSILMSTHVLDSAEKMCDRFVILHKGEIRAVGTLEELRAIFGDSNANLNDIYIALTKE
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=810632 P8R98_RS10275 WP_000912310.1 2086423..2087148(-) (pptA) [Streptococcus agalactiae strain S1]
ATGTTAAAAATTGAAAATGTTACAGGGGGGTATGTTAATATCCCAGTTTTAAAAAATATTTCTTTTGAAGTAAATGATGG
AGAATTAGTTGGATTAATTGGGCTTAATGGTGCAGGAAAATCAACCACTATTAACGAGATTATTGGTATTTTGAGACCCT
ATCAAGGAGATATTACAATTGATGGTATTAGTCTTGAAGCCGACCAAGAACTTTATAGAAAGAAAATAGGCTTTATTCCT
GAAACACCAAGTCTCTATGAGGAACTAACTCTCAGGGAACATTTAGAAACGGTAGCTATGGCGTATGATATTGCCACTGA
TGAAGTTATGGAACGTGCGCAAAAACTATTAGAGATGTTTCGTCTAACAGATAAATTAGACTGGTTTCCCATGCATTTTT
CAAAGGGAATGAAACAAAAGGTTATGATTATTTGTGCTTTTGTTGTATCTCCAAGTTTATTTATTGTTGATGAACCATTT
TTAGGTTTGGATCCACTAGCTATTTCAGATTTGATTAATCTTCTAGCAGAAGAAAAAGCTAAAGGGAAATCTATTTTGAT
GTCAACGCACGTATTAGATTCTGCCGAAAAAATGTGTGATCGTTTTGTTATTTTACATAAAGGAGAAATACGGGCAGTTG
GAACCCTAGAGGAATTACGGGCTATTTTTGGAGACAGTAATGCTAATTTAAATGACATCTACATAGCTCTGACAAAAGAG
GTGTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

77.406

99.17

0.768
  pptA Streptococcus salivarius strain HSISS4

77.406

99.17

0.768