Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACLCAB_RS15095 Genome accession   NZ_CP135244
Coordinates   3090395..3091024 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain OHT76-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3085395..3096024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLCAB_RS15080 (RRJ52_15070) helD 3085637..3087691 (-) 2055 WP_000420533.1 DNA helicase IV -
  ACLCAB_RS15085 (RRJ52_15075) yccF 3087814..3088260 (+) 447 WP_315441652.1 YccF domain-containing protein -
  ACLCAB_RS15090 (RRJ52_15080) yccS 3088270..3090432 (+) 2163 WP_000875020.1 YccS family putative transporter -
  ACLCAB_RS15095 (RRJ52_15085) sxy/tfoX 3090395..3091024 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACLCAB_RS15100 (RRJ52_15090) sulA 3091243..3091752 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACLCAB_RS15105 (RRJ52_15095) ompA 3092109..3093149 (+) 1041 WP_000750416.1 porin OmpA -
  ACLCAB_RS15110 (RRJ52_15100) matP 3093225..3093677 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACLCAB_RS15115 (RRJ52_15105) ycbZ 3093863..3095623 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=810565 ACLCAB_RS15095 WP_000839153.1 3090395..3091024(-) (sxy/tfoX) [Escherichia coli strain OHT76-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=810565 ACLCAB_RS15095 WP_000839153.1 3090395..3091024(-) (sxy/tfoX) [Escherichia coli strain OHT76-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1