Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   RQ468_RS09425 Genome accession   NZ_CP135175
Coordinates   2009194..2009523 (+) Length   109 a.a.
NCBI ID   WP_003104586.1    Uniprot ID   Q9HZ87
Organism   Pseudomonas aeruginosa strain PARM_Z1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2004194..2014523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQ468_RS09410 (RQ468_09410) - 2004994..2005950 (+) 957 WP_023130787.1 UDP-glucose 4-epimerase family protein -
  RQ468_RS09415 (RQ468_09415) - 2005952..2006971 (+) 1020 WP_003158833.1 MraY family glycosyltransferase -
  RQ468_RS09420 (RQ468_09420) - 2007006..2009003 (+) 1998 WP_023088173.1 polysaccharide biosynthesis protein -
  RQ468_RS09425 (RQ468_09425) comEA/comE1 2009194..2009523 (+) 330 WP_003104586.1 ComEA family DNA-binding protein Machinery gene
  RQ468_RS09435 (RQ468_09435) - 2009740..2010936 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  RQ468_RS09440 (RQ468_09440) uvrB 2011124..2013136 (+) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11351.31 Da        Isoelectric Point: 8.0459

>NTDB_id=810441 RQ468_RS09425 WP_003104586.1 2009194..2009523(+) (comEA/comE1) [Pseudomonas aeruginosa strain PARM_Z1]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=810441 RQ468_RS09425 WP_003104586.1 2009194..2009523(+) (comEA/comE1) [Pseudomonas aeruginosa strain PARM_Z1]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9HZ87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385