Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   ROT04_RS09465 Genome accession   NZ_CP135174
Coordinates   2010058..2010387 (+) Length   109 a.a.
NCBI ID   WP_058160371.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PARM_L1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2005058..2015387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ROT04_RS09450 (ROT04_09450) - 2005349..2006554 (+) 1206 WP_058355149.1 DegT/DnrJ/EryC1/StrS family aminotransferase -
  ROT04_RS09455 (ROT04_09455) - 2006747..2007775 (+) 1029 WP_003116434.1 MraY family glycosyltransferase -
  ROT04_RS09460 (ROT04_09460) - 2007870..2009867 (+) 1998 WP_031633096.1 polysaccharide biosynthesis protein -
  ROT04_RS09465 (ROT04_09465) comEA/comE1 2010058..2010387 (+) 330 WP_058160371.1 ComEA family DNA-binding protein Machinery gene
  ROT04_RS09475 (ROT04_09475) - 2010604..2011800 (-) 1197 WP_058200572.1 amino acid aminotransferase -
  ROT04_RS09480 (ROT04_09480) uvrB 2011988..2014000 (+) 2013 WP_043093399.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11381.33 Da        Isoelectric Point: 8.0459

>NTDB_id=810342 ROT04_RS09465 WP_058160371.1 2010058..2010387(+) (comEA/comE1) [Pseudomonas aeruginosa strain PARM_L1]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTLSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=810342 ROT04_RS09465 WP_058160371.1 2010058..2010387(+) (comEA/comE1) [Pseudomonas aeruginosa strain PARM_L1]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCCTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAAGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAGGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385