Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ROT04_RS02435 Genome accession   NZ_CP135174
Coordinates   529041..529766 (-) Length   241 a.a.
NCBI ID   WP_031693667.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PARM_L1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 524041..534766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ROT04_RS02410 (ROT04_02410) - 524513..525028 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  ROT04_RS02415 (ROT04_02415) rarD 525718..526614 (-) 897 WP_023107656.1 EamA family transporter RarD -
  ROT04_RS02420 (ROT04_02420) - 526817..527791 (-) 975 WP_003084794.1 serine/threonine protein kinase -
  ROT04_RS02425 (ROT04_02425) - 527853..528611 (-) 759 WP_003103305.1 TOBE domain-containing protein -
  ROT04_RS02430 (ROT04_02430) - 528679..528999 (-) 321 WP_003129064.1 YfiM family lipoprotein -
  ROT04_RS02435 (ROT04_02435) comF 529041..529766 (-) 726 WP_031693667.1 ComF family protein Machinery gene
  ROT04_RS02440 (ROT04_02440) - 529905..530198 (-) 294 WP_003084806.1 hypothetical protein -
  ROT04_RS02445 (ROT04_02445) - 530252..531178 (-) 927 WP_003129068.1 LysR family transcriptional regulator -
  ROT04_RS02450 (ROT04_02450) - 531296..532054 (+) 759 WP_031639709.1 5-oxoprolinase subunit PxpA -
  ROT04_RS02455 (ROT04_02455) - 532131..532379 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  ROT04_RS02460 (ROT04_02460) - 532390..533766 (+) 1377 WP_023126932.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  ROT04_RS02465 (ROT04_02465) - 533768..534646 (+) 879 WP_128733686.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26948.47 Da        Isoelectric Point: 10.8088

>NTDB_id=810328 ROT04_RS02435 WP_031693667.1 529041..529766(-) (comF) [Pseudomonas aeruginosa strain PARM_L1]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQVCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYTEGLPPPARLLPVPLAPRRERRRGFNQAQQLAERLAGELGLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDVRGLHLALVDDVLTTGATAECLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=810328 ROT04_RS02435 WP_031693667.1 529041..529766(-) (comF) [Pseudomonas aeruginosa strain PARM_L1]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGCTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGTCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGGTGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGCTGCT
GGCGGAACACCTGCGGCAACGCTACACCGAAGGCCTGCCGCCCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCACGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGGCCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGCCTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGTTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGTGCCTTTCCCGTCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Double zinc ribbon domain (DZR_2)

(9-65)

Phosphoribosyl transferase domain (Pribosyltran)

(139-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

37.5

99.585

0.373
  comFC Legionella pneumophila str. Paris

37.826

95.436

0.361