Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   RQ453_RS13590 Genome accession   NZ_CP135173
Coordinates   2892677..2893201 (+) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain CP-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2887677..2898201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQ453_RS13570 (RQ453_13570) - 2887744..2890215 (-) 2472 WP_003095841.1 penicillin-binding protein 1A -
  RQ453_RS13575 (RQ453_13575) pilM 2890400..2891464 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  RQ453_RS13580 (RQ453_13580) pilN 2891464..2892060 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  RQ453_RS13585 (RQ453_13585) pilO 2892057..2892680 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  RQ453_RS13590 (RQ453_13590) comL/pilP 2892677..2893201 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  RQ453_RS13595 (RQ453_13595) pilQ 2893255..2895399 (+) 2145 WP_033995309.1 type 4a pilus secretin PilQ Machinery gene
  RQ453_RS13600 (RQ453_13600) aroK 2895411..2895929 (+) 519 WP_003095833.1 shikimate kinase AroK -
  RQ453_RS13605 (RQ453_13605) aroB 2895979..2897085 (+) 1107 WP_009314395.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=810266 RQ453_RS13590 WP_003095836.1 2892677..2893201(+) (comL/pilP) [Pseudomonas aeruginosa strain CP-1]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=810266 RQ453_RS13590 WP_003095836.1 2892677..2893201(+) (comL/pilP) [Pseudomonas aeruginosa strain CP-1]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGACCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGATGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362