Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   RQ453_RS13580 Genome accession   NZ_CP135173
Coordinates   2891464..2892060 (+) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain CP-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2886464..2897060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQ453_RS13570 (RQ453_13570) - 2887744..2890215 (-) 2472 WP_003095841.1 penicillin-binding protein 1A -
  RQ453_RS13575 (RQ453_13575) pilM 2890400..2891464 (+) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  RQ453_RS13580 (RQ453_13580) pilN 2891464..2892060 (+) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  RQ453_RS13585 (RQ453_13585) pilO 2892057..2892680 (+) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  RQ453_RS13590 (RQ453_13590) comL/pilP 2892677..2893201 (+) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  RQ453_RS13595 (RQ453_13595) pilQ 2893255..2895399 (+) 2145 WP_033995309.1 type 4a pilus secretin PilQ Machinery gene
  RQ453_RS13600 (RQ453_13600) aroK 2895411..2895929 (+) 519 WP_003095833.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=810264 RQ453_RS13580 WP_003095839.1 2891464..2892060(+) (pilN) [Pseudomonas aeruginosa strain CP-1]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=810264 RQ453_RS13580 WP_003095839.1 2891464..2892060(+) (pilN) [Pseudomonas aeruginosa strain CP-1]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCGGCGCTGGTATTCCTCGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369