Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   RQ453_RS09375 Genome accession   NZ_CP135173
Coordinates   1998693..1999022 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CP-1     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1993693..2004022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RQ453_RS09360 (RQ453_09360) - 1994393..1995352 (+) 960 WP_073657243.1 UDP-glucose 4-epimerase family protein -
  RQ453_RS09365 (RQ453_09365) - 1995349..1996374 (+) 1026 WP_009313766.1 MraY family glycosyltransferase -
  RQ453_RS09370 (RQ453_09370) - 1996505..1998502 (+) 1998 WP_009313767.1 polysaccharide biosynthesis protein -
  RQ453_RS09375 (RQ453_09375) comEA/comE1 1998693..1999022 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  RQ453_RS09385 (RQ453_09385) - 1999239..2000435 (-) 1197 WP_033996105.1 amino acid aminotransferase -
  RQ453_RS09390 (RQ453_09390) uvrB 2000623..2002635 (+) 2013 WP_003138489.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=810240 RQ453_RS09375 WP_003091430.1 1998693..1999022(+) (comEA/comE1) [Pseudomonas aeruginosa strain CP-1]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=810240 RQ453_RS09375 WP_003091430.1 1998693..1999022(+) (comEA/comE1) [Pseudomonas aeruginosa strain CP-1]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385