Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   P5P90_RS08825 Genome accession   NZ_CP121111
Coordinates   1861093..1862454 (+) Length   453 a.a.
NCBI ID   WP_278034355.1    Uniprot ID   -
Organism   Flavobacterium nitratireducens strain JCM 17678     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1856093..1867454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5P90_RS08805 - 1857685..1858488 (-) 804 WP_278034351.1 glycogen/starch synthase -
  P5P90_RS08810 panC 1858567..1859445 (+) 879 WP_278034352.1 pantoate--beta-alanine ligase -
  P5P90_RS08815 panD 1859460..1859810 (+) 351 WP_278034353.1 aspartate 1-decarboxylase -
  P5P90_RS08820 - 1859945..1861093 (+) 1149 WP_278034354.1 alpha/beta hydrolase-fold protein -
  P5P90_RS08825 radA 1861093..1862454 (+) 1362 WP_278034355.1 DNA repair protein RadA Machinery gene
  P5P90_RS08830 - 1862528..1864927 (-) 2400 WP_278034356.1 M28 family peptidase -
  P5P90_RS08835 - 1864950..1865300 (-) 351 WP_278034357.1 hypothetical protein -
  P5P90_RS08840 - 1865307..1865858 (-) 552 WP_278034358.1 YfiT family bacillithiol transferase -
  P5P90_RS08845 - 1865861..1867390 (-) 1530 WP_278034359.1 bifunctional GNAT family N-acetyltransferase/carbon-nitrogen hydrolase family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49774.22 Da        Isoelectric Point: 5.8267

>NTDB_id=810183 P5P90_RS08825 WP_278034355.1 1861093..1862454(+) (radA) [Flavobacterium nitratireducens strain JCM 17678]
MSKVKTSFFCQSCGTSYAKWQGQCNACKEWNTIAEEIIQKQDKVAWKSEPTPSNRAPKPLKITEIDSTQEIRMDTTDAEL
NRVLGGGIVPGSLTLLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRAERITPSSDNCYILTETKTQNIFKQI
EAIEPEIVIIDSIQTLHTDYIESTAGSISQIRETTAELIKFAKESNIPVILIGHITKDGNIAGPKILEHMVDTVLQFEGD
RNHIYRILRSLKNRFGSTSEIGIYEMLGSGLREVSNPSEILISHKDEELSGTAIATTLEGMRPLMIEIQSLVSTAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGAKDVFLNITGGITVDDPAIDLAVVAAILSSNEDIPVDKGFCFAGEVGLSGEI
RPVNRVDQRIQEAEKLGFSTIFVSKYNKIALKNTGIKIELVAKIEDVASMLFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=810183 P5P90_RS08825 WP_278034355.1 1861093..1862454(+) (radA) [Flavobacterium nitratireducens strain JCM 17678]
ATGTCAAAAGTTAAAACCTCTTTTTTCTGTCAGAGTTGCGGTACTTCCTATGCTAAATGGCAAGGCCAATGCAACGCCTG
CAAAGAATGGAATACCATTGCCGAAGAAATCATTCAAAAACAAGATAAGGTTGCCTGGAAAAGTGAACCAACTCCAAGCA
ATAGAGCACCCAAACCTTTAAAAATAACTGAAATTGATTCGACTCAGGAAATCCGAATGGACACAACTGATGCCGAATTG
AATCGCGTATTGGGTGGCGGAATCGTACCCGGTTCTTTAACGCTGTTAGGCGGTGAACCTGGAATTGGAAAGAGTACGCT
TTTACTCCAAATTTCATTAAAACTACCTTATAAAACGTTGTATGTTTCGGGCGAAGAAAGTCAGAAGCAAATCAAAATGC
GTGCGGAAAGAATTACTCCTTCCAGCGACAATTGCTACATCTTGACTGAAACTAAAACGCAAAACATCTTCAAACAAATT
GAAGCCATTGAACCTGAAATCGTCATTATCGATTCGATTCAAACCCTGCATACCGATTATATCGAGTCGACGGCGGGAAG
TATTTCGCAAATTAGAGAAACCACTGCCGAACTTATTAAGTTTGCCAAAGAAAGCAATATTCCCGTAATCTTAATTGGTC
ACATAACCAAAGACGGCAACATCGCTGGACCCAAAATACTGGAACACATGGTAGATACGGTTCTGCAATTTGAAGGCGAC
AGAAATCACATTTATCGCATTCTTCGTTCCCTAAAAAACCGTTTTGGTTCTACTTCTGAAATTGGAATTTACGAAATGCT
AGGCAGCGGATTAAGAGAAGTCTCCAATCCATCGGAAATATTGATTTCGCACAAAGACGAAGAATTATCAGGAACTGCTA
TTGCTACCACACTCGAAGGCATGCGCCCACTGATGATTGAAATCCAATCCTTAGTAAGTACCGCTGTTTATGGAACGCCA
CAACGCAGCACCACAGGTTATAATGCTAAACGTCTGAATATGATTCTGGCGGTTTTGGAAAAAAGAGCTGGATTCCGTTT
AGGTGCCAAAGACGTTTTCCTAAACATCACAGGTGGAATTACCGTAGATGATCCGGCTATTGATTTGGCTGTTGTAGCCG
CTATTTTATCTTCGAATGAGGATATTCCGGTGGATAAAGGTTTCTGTTTTGCGGGTGAAGTAGGTCTTTCAGGCGAAATT
AGACCCGTAAACCGCGTAGACCAACGCATTCAGGAAGCTGAAAAATTGGGATTCTCTACCATTTTTGTTTCTAAATACAA
TAAAATAGCCTTAAAAAACACAGGCATCAAAATCGAATTAGTCGCTAAAATTGAAGATGTGGCAAGTATGCTTTTTGGAT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(64-219)

Subunit ChlI of Mg-chelatase (ChlI)

(316-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.495

100

0.481
  radA Streptococcus mitis SK321

50

94.923

0.475
  radA Streptococcus pneumoniae Rx1

50

94.923

0.475
  radA Streptococcus pneumoniae D39

50

94.923

0.475
  radA Streptococcus pneumoniae R6

50

94.923

0.475
  radA Streptococcus pneumoniae TIGR4

50

94.923

0.475
  radA Streptococcus mitis NCTC 12261

50

94.923

0.475