Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   RO839_RS10845 Genome accession   NZ_CP135132
Coordinates   2376405..2378015 (-) Length   536 a.a.
NCBI ID   WP_057682473.1    Uniprot ID   -
Organism   Xylella fastidiosa strain CO33     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2371405..2383015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RO839_RS10830 (RO839_10830) pilA/pilAI 2371706..2372140 (+) 435 WP_004084597.1 pilin Machinery gene
  RO839_RS10835 (RO839_10835) pilB 2372980..2374713 (+) 1734 WP_057682386.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RO839_RS10840 (RO839_10840) - 2374807..2376219 (-) 1413 WP_057682385.1 sigma-54 dependent transcriptional regulator -
  RO839_RS10845 (RO839_10845) pilS 2376405..2378015 (-) 1611 WP_057682473.1 ATP-binding protein Regulator
  RO839_RS10850 (RO839_10850) sucC 2378270..2379433 (+) 1164 WP_004090371.1 ADP-forming succinate--CoA ligase subunit beta -
  RO839_RS10855 (RO839_10855) sucD 2379462..2380334 (+) 873 WP_057682384.1 succinate--CoA ligase subunit alpha -
  RO839_RS10860 (RO839_10860) - 2380692..2381312 (+) 621 WP_004090369.1 hypothetical protein -

Sequence

Protein


Download         Length: 536 a.a.        Molecular weight: 59121.44 Da        Isoelectric Point: 6.1390

>NTDB_id=810150 RO839_RS10845 WP_057682473.1 2376405..2378015(-) (pilS) [Xylella fastidiosa strain CO33]
MLFSASLIHRIEFAPQRELYFLALYRILEAGLIAALVFSPVSLLVDPESDPHLGTVVAVGYLLLATILLVWGRNERWFTP
LVFGSTVADILAATLAIHALPKASAGIAMMLLFNVAAAAILLRLRFSMILAWIAGVAMLVEYIWTVLSEGDSSRSLAELL
MFFTSYTAVAYMCHQAAQRARYSQALAEKRRAQIVNLAEINELIIRRMRTGVLVVDAANRIGLSNETAAALLGYDRQLVE
SDYDLATVAPELIMRLKCWRVGRHYEDTPLRLAPDQPEVQPRFVSLLADSGLTLIFLDDVSVVSRRAESLTLLALGRFSA
SLAHEIRNPLAAIKHASQLLEESSNLDKGDQRLLDIILKQCQRTNGIVESVLGLARRERANPENLDLVGFVSRFVDEYRQ
TLSSEYDNLEIQTLHSTVQALVDPRHLYQILAVLTHNALRYGRFPDTPAQVRIEVVYTGGSVGINVLDQGPGIPDAAVLQ
LFQPFFTTSDHGTGLGLYIARELCNANQSNLEYVAIPGGGACFRITLPGPYALIPN

Nucleotide


Download         Length: 1611 bp        

>NTDB_id=810150 RO839_RS10845 WP_057682473.1 2376405..2378015(-) (pilS) [Xylella fastidiosa strain CO33]
GTGTTGTTCAGCGCTTCGCTGATTCATCGGATCGAATTTGCCCCGCAGCGTGAACTTTATTTTCTCGCGTTGTATCGGAT
CTTGGAGGCTGGATTGATCGCGGCCCTGGTGTTCAGTCCGGTGTCGCTATTGGTGGATCCTGAGAGTGATCCACATTTGG
GCACGGTTGTCGCTGTCGGTTATTTGCTGTTGGCTACCATTTTGTTGGTCTGGGGTCGTAATGAGCGTTGGTTCACACCA
TTAGTCTTTGGAAGTACTGTCGCCGACATTTTGGCTGCCACTCTTGCTATTCACGCTCTGCCTAAAGCCAGTGCCGGCAT
TGCGATGATGTTGTTGTTTAACGTTGCTGCCGCCGCCATCTTATTGCGGTTGCGTTTCAGCATGATCCTGGCTTGGATTG
CTGGGGTTGCGATGCTTGTGGAATACATCTGGACTGTACTCAGTGAGGGTGATTCCTCACGTTCACTGGCCGAGCTCCTT
ATGTTTTTCACCAGCTACACTGCAGTGGCGTATATGTGTCATCAGGCCGCGCAGCGGGCTAGATATAGCCAAGCTCTGGC
TGAAAAGCGCCGTGCCCAGATAGTCAACTTGGCAGAGATCAATGAGCTGATTATCCGACGTATGCGGACGGGTGTGTTGG
TGGTGGATGCTGCTAATCGAATCGGTTTGAGTAACGAAACTGCAGCTGCGTTGCTGGGATACGACAGACAATTGGTCGAG
AGTGATTACGATCTCGCTACGGTTGCTCCGGAGTTGATAATGCGTCTGAAGTGTTGGCGTGTCGGTCGACACTACGAAGA
TACTCCGTTGCGATTAGCGCCTGATCAACCTGAGGTTCAGCCTCGCTTTGTGAGTTTGCTTGCCGACAGTGGATTGACAT
TAATTTTCCTTGATGATGTCAGTGTTGTTTCACGCCGTGCCGAATCGTTGACTTTGTTGGCGCTTGGACGTTTTTCAGCC
AGTTTGGCGCACGAGATTCGTAATCCTTTGGCTGCAATTAAACATGCATCGCAGCTGTTGGAAGAGTCCTCCAATCTTGA
CAAAGGCGATCAACGGCTGTTGGACATTATTCTAAAGCAGTGCCAGCGGACCAATGGGATTGTGGAGAGCGTGCTTGGTT
TGGCAAGACGCGAACGTGCTAACCCGGAAAATTTGGATTTGGTCGGTTTTGTGTCCCGATTTGTCGATGAATACCGCCAG
ACATTGTCAAGCGAGTATGACAATCTGGAGATACAAACGTTGCACAGTACCGTGCAGGCACTGGTGGATCCACGCCACTT
GTACCAGATCCTCGCTGTCCTTACCCACAACGCGTTGCGTTATGGCCGCTTTCCGGATACTCCGGCACAGGTGCGTATTG
AGGTGGTATATACCGGAGGCAGCGTGGGGATCAATGTCCTTGATCAGGGGCCTGGTATACCCGATGCGGCTGTTTTGCAG
CTTTTTCAGCCTTTTTTCACTACTTCCGATCATGGTACGGGGCTTGGTCTATATATCGCTCGTGAGCTATGCAATGCGAA
TCAATCCAATCTTGAGTACGTGGCCATTCCAGGGGGCGGGGCTTGTTTCCGGATTACTTTGCCGGGTCCGTATGCATTGA
TTCCGAATTGA

Domains

Predicted by InterProScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(314-378)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(423-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

37.044

97.201

0.36