Detailed information NTG0810150

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: P8T86_RS18375
• Genome accession: NZ_CP121102
• Coordinates: 3423657..3425024 (+)
• Length: 455 a.a.
• NCBI ID: WP_036655524.1
• Uniprot ID: A0AAP5JTN6
• Organism: Paenibacillus larvae strain PL006
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3418657..3430024

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P8T86_RS18355 (P8T86_18270)	-	3418852..3419313 (+)	462	WP_036655527.1	CtsR family transcriptional regulator	-
P8T86_RS18360 (P8T86_18275)	-	3419327..3419851 (+)	525	WP_023482201.1	UvrB/UvrC motif-containing protein	-
P8T86_RS18365 (P8T86_18280)	-	3419904..3420974 (+)	1071	WP_036655525.1	protein arginine kinase	-
P8T86_RS18370 (P8T86_18285)	clpC	3421031..3423481 (+)	2451	WP_023482199.1	ATP-dependent protease ATP-binding subunit ClpC	-
P8T86_RS18375 (P8T86_18290)	radA	3423657..3425024 (+)	1368	WP_036655524.1	DNA repair protein RadA	Machinery gene
P8T86_RS18380 (P8T86_18295)	disA	3425057..3426136 (+)	1080	WP_023482197.1	DNA integrity scanning diadenylate cyclase DisA	-
P8T86_RS18385 (P8T86_18300)	pssA	3426208..3426951 (+)	744	WP_023482196.1	CDP-diacylglycerol--serine O-phosphatidyltransferase	-
P8T86_RS18390 (P8T86_18305)	-	3427057..3427452 (-)	396	WP_023482195.1	hypothetical protein	-
P8T86_RS18395 (P8T86_18310)	-	3427592..3428662 (+)	1071	WP_036655521.1	PIN/TRAM domain-containing protein	-
P8T86_RS18400 (P8T86_18315)	ispD	3428716..3429414 (+)	699	WP_023482193.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
P8T86_RS18405 (P8T86_18320)	ispF	3429415..3429894 (+)	480	WP_023482192.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 49954.50 Da
• Isoelectric Point: 6.6098

>NTDB_id=810150 P8T86_RS18375 WP_036655524.1 3423657..3425024(+) (radA) [Paenibacillus larvae strain PL006]
MGKQKTKFYCQDCGYESIKWLGKCPDCGAWNTFVEEIQKIMKTQGMDSSLFQTKEKPQPIINIESSPEPRVITENRELNR
VLGGGFVPGSLILVGGDPGIGKSTLLLQTSYSLAKSGQKVLYISGEESVKQTRLRADRLNAMSRLLYVLCETNLESIEEA
IREVEPDFMVIDSIQTVYHPSVTSAPGTVSQVRECTGHFMRIAKTKGIATVLVGHVTKEGAIAGPRMLEHMVDCVLYFEG
ERHHSYRVLRAVKNRFGSTNEIGIFEMQETGLTEVHNPSELFLSERPLGVAGSTVVASMEGTRPVLVEIQALVSMTNFPS
PRRMATGIDYNRLSLIIAVLEKRVGLFLQNQDAYLNVAGGVRLDEPAVDLAAAISIASSFKEQATQPFDVVFGEVGLTGE
VRGVSRVEQRVNEAQKLGFKRVIMPEKSLKGFTPPRGIEVIGVNTVDEALAITLG

Nucleotide

• Length: 1368 bp

>NTDB_id=810150 P8T86_RS18375 WP_036655524.1 3423657..3425024(+) (radA) [Paenibacillus larvae strain PL006]
ATGGGTAAACAGAAGACTAAGTTTTATTGTCAGGATTGTGGGTACGAATCGATTAAATGGCTGGGAAAATGTCCGGACTG
CGGAGCTTGGAATACATTTGTCGAGGAAATACAAAAAATTATGAAGACACAAGGAATGGATTCATCCTTGTTTCAAACGA
AAGAAAAACCACAACCAATCATAAATATAGAAAGCAGCCCGGAGCCTAGGGTAATTACAGAGAACAGAGAACTCAACAGG
GTATTGGGGGGAGGGTTCGTTCCCGGGTCCCTTATATTAGTCGGAGGGGATCCAGGAATAGGAAAGTCCACTCTTCTTCT
TCAAACTTCTTATTCTTTAGCAAAATCCGGCCAGAAGGTTTTATATATATCCGGAGAGGAATCGGTGAAACAGACAAGGC
TGCGGGCGGACCGTTTAAATGCTATGTCACGATTGCTTTATGTCCTCTGCGAGACGAATCTGGAATCCATTGAGGAGGCA
ATTCGGGAAGTAGAACCTGATTTTATGGTTATCGATTCCATTCAGACGGTATACCATCCTTCTGTTACTTCTGCTCCAGG
TACTGTATCCCAGGTCAGGGAATGTACAGGGCATTTCATGAGAATTGCCAAAACGAAAGGAATTGCTACTGTACTGGTAG
GCCATGTCACCAAAGAAGGGGCCATTGCCGGACCAAGAATGCTGGAGCATATGGTTGATTGTGTCCTTTATTTCGAGGGA
GAGCGACATCATTCTTACCGCGTTCTTCGGGCTGTCAAAAACCGTTTTGGCTCAACTAATGAAATCGGTATTTTTGAAAT
GCAGGAAACCGGTTTGACTGAAGTTCATAATCCTTCCGAGCTGTTTTTGTCAGAGAGGCCTCTGGGGGTTGCAGGTTCCA
CGGTAGTCGCCAGTATGGAGGGGACACGACCCGTATTGGTTGAGATTCAGGCGTTGGTCTCAATGACCAACTTTCCTTCT
CCAAGAAGGATGGCTACAGGTATAGATTATAATCGCTTATCTTTAATCATTGCCGTTTTGGAGAAAAGAGTAGGATTATT
TTTACAAAATCAGGATGCTTATTTGAATGTCGCAGGCGGAGTTAGACTCGATGAACCTGCGGTAGATCTGGCCGCGGCTA
TCAGTATTGCATCCAGCTTCAAAGAACAAGCTACCCAGCCTTTTGATGTTGTTTTTGGTGAGGTAGGGCTTACCGGCGAA
GTAAGGGGAGTCTCCCGGGTAGAGCAGCGGGTCAACGAAGCCCAGAAGCTTGGATTTAAACGTGTCATTATGCCCGAAAA
AAGTCTTAAAGGATTCACACCACCACGCGGGATTGAAGTGATAGGGGTTAACACGGTAGATGAAGCATTAGCCATTACAC
TAGGCTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (63-220)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (351-427)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	68.49	100	0.688
radA	Streptococcus mitis NCTC 12261	58.667	98.901	0.58
radA	Streptococcus mitis SK321	58.667	98.901	0.58
radA	Streptococcus pneumoniae Rx1	58.444	98.901	0.578
radA	Streptococcus pneumoniae D39	58.444	98.901	0.578
radA	Streptococcus pneumoniae R6	58.444	98.901	0.578
radA	Streptococcus pneumoniae TIGR4	58.444	98.901	0.578